A user-friendly browser application for calculating the Gut Microbiome Wellness Index (GMWI) from a taxonomic profile of a stool shotgun metagenome sample.

If you use GMWI-webtool, please cite:

Daniel Chang, Vinod K Gupta, Benjamin Hur, Kevin Y Cunningham, Jaeyun Sung, GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling, Bioinformatics, Volume 39, Issue 2, February 2023, https://doi.org/10.1093/bioinformatics/btad061

First, run MetaPhlAn2 on a stool shotgun metagenome sample (.fastq file(s)). Then, simply upload the MetaPhlAn2 output file (.txt) in the designated space on the lefthand side of the page. See Supplementary Information for a detailed description about running the required pipeline, as well as the data files used to build GMWI-webtool.