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Accurate Phylogenetic Inference with a Symmetry-preserving Neural Network Model

  • Claudia Solis-Lemus
  • Shengwen Yang
  • Leonardo Zepeda-Núñez

This repository contains the scripts, data, and plots for the paper:

@misc{solislemus2022accurate,
      title={Accurate Phylogenetic Inference with a Symmetry-preserving Neural Network Model}, 
      author={Claudia Solis-Lemus and Shengwen Yang and Leonardo Zepeda-Nunez},
      year={2022},
      eprint={2201.04663},
      archivePrefix={arXiv},
      primaryClass={q-bio.PE}
}

Folder structure

  • scripts contains the python scripts with the neural network implementations.
  • plotscontains the link to the Google Drive with the output files needed to reproduce the plots as well as the Rmd script with the R code for the plots.
  • simulations-realdata contains the scripts and code to do the simulations and real data analysis in the manuscript.
  • LICENSE: this repository is under the MIT license.

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Issues and questions are encouraged through the GitHub issue tracker. For bugs or errors, please make sure to provide enough details for us to reproduce the error on our end.

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