GPU-accelerated image processing using cupy and CUDA

Overview

napari-cupy-image-processing

License PyPI Python Version tests codecov

GPU-accelerated image processing using cupy and CUDA

img.png


This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

Follow the instructions for installing cupy on your computer first. Afterwards, you can install napari-cupy-image-processing via pip:

pip install napari-cupy-image-processing

A more detailed example for installation (change 10.2 to your CUDA version):

conda create --name cupy_p38 python=3.8
conda activate cupy_p38
conda install -c conda-forge cupy cudatoolkit=10.2
conda install napari
pip install napari-cupy-image-processing

Known issues

When executing the first operation right after CUDA installation, napari may freeze and crash. Wait a minute and try again.

Contributing

Contributions are very welcome. Adding cupy ndimage functions is quite easy as you can see in the implementation of the current operations. If you need another function in napari, just send a PR. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-cupy-image-processing" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

You might also like...
A small Python module for BMP image processing.

micropython-microbmp A small Python module for BMP image processing. It supports BMP image of 1/2/4/8/24-bit colour depth. Loading supports compressio

Image Processing HighPass Filter With Python
Image Processing HighPass Filter With Python

Image_Processing_HighPassFilter High Pass Filter take the high frequency and ignore the low frequency High Pass Filter can be use to sharpening an ima

Using P5.js, Processing and Python to create generative art
Using P5.js, Processing and Python to create generative art

Experiments in Generative Art Using Python, Processing, and P5.js Quick Links Daily Sketches March 2021. | Gallery | Repo | Done using P5.js Genuary 2

Simple Python package to convert an image into a quantized image using a customizable palette
Simple Python package to convert an image into a quantized image using a customizable palette

Simple Python package to convert an image into a quantized image using a customizable palette. Resulting image can be displayed by ePaper displays such as Waveshare displays.

Seaborn-image is a Python image visualization library based on matplotlib and provides a high-level API to draw attractive and informative images quickly and effectively.
Seaborn-image is a Python image visualization library based on matplotlib and provides a high-level API to draw attractive and informative images quickly and effectively.

seaborn-image: image data visualization Description Seaborn-image is a Python image visualization library based on matplotlib and provides a high-leve

kikuchipy is an open-source Python library for processing and analysis of electron backscatter diffraction (EBSD) patterns
kikuchipy is an open-source Python library for processing and analysis of electron backscatter diffraction (EBSD) patterns

kikuchipy is an open-source Python library for processing and analysis of electron backscatter diffraction (EBSD) patterns. The library builds on the

An executor that performs standard pre-processing and normalization on images.

An executor that performs standard pre-processing and normalization on images.

Pixel Brush Processing Unit
Pixel Brush Processing Unit

Pixel Brush Processing Unit The Pixel Brush Processing Unit (PBPU for short) is a simple 4-Bit CPU I designed in Logisim while I was still in school a

Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine.
Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine.

img2dataset Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine. Also supports

Releases(0.3.1)
  • 0.3.1(Aug 27, 2022)

  • 0.3.0(Jul 10, 2022)

    New features

    • Added docstrings to enable searching in them via the napari-assistant

    Backwards compatibility breaking changes:

    • The unused viewer parameter of all functions was removed.

    Deprecated methods:

    • The measurement() function has been deprecated because it was too slow and it will be removed with the next major release. Consider using napari-skimage-regionprops or napari-simpleitk-image-processing instead.
    Source code(tar.gz)
    Source code(zip)
  • 0.2.3(May 8, 2022)

    Deprecated functions

    • napari_cupy_image_processing.measurement() has been deprecated. Use napari_simpleitk_image_processing.label_statistics() instead.
    Source code(tar.gz)
    Source code(zip)
  • 0.2.2(Mar 20, 2022)

  • 0.2.1(Mar 20, 2022)

  • 0.2.0(Mar 8, 2022)

    Bugfix:

    • measurements() was not easily callable from the API (Thanks to Edwin Hernandez G for reporting!)

    Backwards compatibility breaking changes:

    • measurements() now takes images (numpy arrays) as parameters, and no longer napari layers.
    Source code(tar.gz)
    Source code(zip)
  • 0.1.9(Jan 1, 2022)

  • 0.1.8(Dec 12, 2021)

  • 0.1.7(Dec 4, 2021)

    Backwards compatibible changes

    • Changed menu entries to cover finer differentiation between various filtering and segmentation techniquese
    Source code(tar.gz)
    Source code(zip)
  • 0.1.6(Nov 28, 2021)

  • 0.1.5(Nov 12, 2021)

  • 0.1.4(Nov 9, 2021)

  • 0.1.2(Oct 28, 2021)

  • 0.1.1(Oct 22, 2021)

  • 0.1.0(Oct 22, 2021)

    New functions

    • gaussian_filter
    • gaussian_laplace
    • median_filter
    • percentile_filter
    • white_tophat
    • morphological_gradient
    • morphological_laplace
    • wiener
    • threshold_otsu
    • binary_fill_holes
    • label
    Source code(tar.gz)
    Source code(zip)
Owner
Robert Haase
Computational Microscopist, BioImage Analyst, Code Jockey
Robert Haase
Generate meme GIFs in which an image you choose can be viewed by the user only after they wait a whole hour.

Generate meme GIFs in which an image you choose can be viewed by the user only after they wait a whole hour.

Feliks Maak 1 Jan 31, 2022
A 3D structural engineering finite element library for Python.

An easy to use elastic 3D structural engineering finite element analysis library for Python.

Craig 220 Dec 27, 2022
Napari simpleitk image processing

napari-simpleitk-image-processing (n-SimpleITK) Process images using SimpleITK in napari Usage Filters of this napari plugin can be found in the Tools

Robert Haase 11 Dec 19, 2022
Kimimaro: Skeletonize Densely Labeled Images

Kimimaro: Skeletonize Densely Labeled Images # Produce SWC files from volumetric images. kimimaro forge labels.npy --progress # writes to ./kimimaro_o

92 Dec 17, 2022
pix2tex: Using a ViT to convert images of equations into LaTeX code.

The goal of this project is to create a learning based system that takes an image of a math formula and returns corresponding LaTeX code.

Lukas Blecher 2.6k Dec 30, 2022
This piece of code is a User Welcomer with Image Manipulation using Python and Pillow (PIL).

This piece of code is a User Welcomer with Image Manipulation using Python and Pillow (PIL).

Bero 4 Jan 11, 2022
A Python package implementing various HDRI / Radiance image processing algorithms.

Colour - HDRI A Python package implementing various HDRI / Radiance image processing algorithms. It is open source and freely available under the New

colour-science 111 Dec 06, 2022
Python scripts for semi-automated morphometric analysis of atolls from Landsat satellite Imagery.

AtollGeoMorph Python scripts for semi-automated morphometric analysis of atolls from Landsat satellite Imagery. The python scripts included allow user

1 Dec 16, 2022
A suite of useful tools based on 3D interactivity in napari

napari-threedee A suite of useful tools based on 3D interactivity in napari This napari plugin was generated with Cookiecutter using @napari's cookiec

11 Dec 14, 2022
A Python3 library to generate dynamic SVGs

The Python library for generating dynamic SVGs using Python3

1 Dec 23, 2021
Console images in 48 colors, 216 colors and full rgb

console_images Console images in 48 colors, 216 colors and full rgb Full RGB 216 colors 48 colors If it does not work maybe you should change color_fu

Урядов Алексей 5 Oct 11, 2022
Computational Xmas Tree lights!

Computational Xmas Tree This repo contains the code for the computational illumination of a Christmas Tree! It is based on the work by Matt Parker fro

GSD6338 146 Dec 23, 2022
Docbarcodes extracts 1D and 2D barcodes from scanned PDF documents or images. It can be used to automate extraction and processing of all kind of documents.

Intro Barcodes are being used in many documents or forms to enable machine reading capabilities and reduce manual processing effort. Simple 1D barcode

Arlind Nocaj 3 Jun 18, 2022
FrostedGlass is a translucent frosted glass effect widget, that creates a context with the background behind it.

FrostedGlass FrostedGlass is a translucent frosted glass effect widget, that creates a context with the background behind it. The effect is drawn on t

Kivy Garden 24 Dec 10, 2022
Tool made for the FWA Yearbook Team to resize multiple images quickly.

ImageResize Tool Tool made for the FWA Yearbook Team to resize multiple images quickly. Make sure to check this repo for future updates How to Use The

LGobin 1 Jan 07, 2022
Bot by image recognition simulating (random) human clicks

bbbot22 bot por reconhecimento de imagem simulando cliques humanos (aleatórios) inb4: sim, esse é basicamente o mesmo bot de 2021 porque a Globo não t

Yuri 2 Apr 05, 2022
Seeks to remove text from an image in a convincing way.

Text-Removal This is a Computer Vision project that seeks to successfully remove text from an image by covering the text areas in a convincing way. He

6 Nov 22, 2022
An add to make adding screenshots and copied images to the scene easy

Blender Clipboard to Scene It doesn't work with version 2.93 and higher (I tested it on 2.91 and 2.83) There is an issue with importing the Pillow mod

Mohammad Mehdi Afkhami 3 Dec 29, 2021
Sombra is simple Raytracer written in pure Python.

Sombra Sombra is simple Raytracer written in pure Python. It's main purpose is to help understand how raytracing works with a clean code. If you are l

Hernaldo Jesus Henriquez Nuñez 10 Jul 16, 2022
Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation.

Description Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation. Double cl

David Meijer 1 Dec 02, 2021