Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1-column txt file (1 taxonomy id for each file)

Related tags

GUI Developmentcodon_optimize_cds_paired_with_taxids_singlefastas_gui
Overview

codon optimize cds paired with taxids singlefastas gui DOI

Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1-column txt file (1 taxonomy id for each file)

Depedences

  1. linux OS (tested on ubuntu 20.04 LTS)
  2. python 3.8.2 or later
  3. anaconda or miniconda
  4. Gooey conda install -c conda-forge gooey(if you get errors during installation or runtime try installing gtk sudo apt-get install libgtk-3-dev)
  5. biopython pip install biopython
  6. pandas pip install pandas
  7. dnachisel pip install dnachisel

linux desktop app installation

  1. open a linux text editor and edit in the python file the shebang line (to find where python is type in the terminal which python3)
  2. convert to executable with chmod +x codon_optimize_cds_paired_with_taxids_singlefastas_gui.py
  3. open a linux text editor and edit the PATHs in the .desktop file
  4. move the file to /usr/share/applications
  5. reboot your machine

Output

The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy id of the organism they are codon optimized for

You might also like...
A simple quiz app using API and GUI
A simple quiz app using API and GUI

GUI-Quiz-APP It's a simple quiz app using API and GUI.

KALPAK KUMAR DAS 1 Feb 3, 2022
GUI based app made in python using tkinter
GUI based app made in python using tkinter

Virtual Keyboard A GUI application made in python using tkinter This is my first ever proper GUI based application project after learning tkinter rece

AbhineetK 10 Dec 10, 2022
A GUI for designing Python GUI's for PySimpleGUI.
A GUI for designing Python GUI's for PySimpleGUI.

SimpleGUIBuilder A GUI for designing Python GUI's for PySimpleGUI. Installation There is none :) just download the file from a release and run it. Don

Miguel Martins 65 Dec 22, 2022
PyQt5 Sample GUI Program - Python PyQt5 Sample GUI application
PyQt5 Sample GUI Program - Python PyQt5 Sample GUI application

Python PyQt5 Sample GUI application Program work like this Designed GUI using De

Dimuth De Zoysa 5 Mar 27, 2022
Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo.
Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo.

stock-graph-python Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo. Tiingo API Key You will need to add your

Toby 12 May 14, 2022
EZ Presence - A GUI-Python app which makes it easy to set a custom Discord Rich Presence. (BETA)
EZ Presence - A GUI-Python app which makes it easy to set a custom Discord Rich Presence. (BETA)

EZ Presence EZ Presence is a GUI-Python app which makes it easy to set any custom Discord Rich Presence. Using the App How to Run Since the app is in

notsniped 2 Mar 1, 2022
Weather-API-GUI-Tkinter - A weather tool made using tkinter which works by fetching query city weather using an API
Weather-API-GUI-Tkinter - A weather tool made using tkinter which works by fetching query city weather using an API

Weather-API-GUI-Tkinter ☁️ ❄️ version- 1️⃣ . 0️⃣ . 0️⃣ This repo contains a weat

SasiVatsal 4 Jul 8, 2022
Custom GUI for your Blender add-ons using Dear ImGui
Custom GUI for your Blender add-ons using Dear ImGui

Dear Imgui for Blender Use the infamous Dear ImGui library directly in your Blender scripts! This means custom GUI drawing in your operators: Normally

Elie Michel 83 Dec 25, 2022
Basic calculator using Tkinter GUI
Basic calculator using Tkinter GUI

Basic calculator using Tkinter GUI

Rogerio Penchel 17 Jan 9, 2022
Releases(v2.0)

  • v2.0(Jan 13, 2022)

  • v1.0(Jan 9, 2022)

    Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1-column txt file (1 taxonomy id for each file). The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy id of the organism they are codon optimized for.

    Source code(tar.gz)
    Source code(zip)
Owner
Olga Tsiouri
Biochemist & Biotechnologist. PhD candidate at @plant_env, @uth.gr #bioinformatics, plant-fungal omics
Olga Tsiouri
GitHub Repository
Mini is a web browser application based on the Python PyQt web engine, made in 290 lines of code.

Mini Mini is a web browser application based on the Python PyQt web engine, made in 290 lines of code. The code is written and published as is, so the

Dmitry Karpenko 6 Nov 07, 2022
Kivy is an open source Python framework for creating cross-platform multi-touch mobile applications with Natural User Interface.

Kivy is an open source Python framework for creating cross-platform multi-touch mobile applications with Natural User Interface.

Grace Ugochi Nneji 3 Feb 15, 2022
The quick and easy way to add versatile graphical interfaces with networking capabilities to your Python programs.

The quick and easy way to add versatile graphical interfaces with networking capabilities to your Python programs. Give instant access to your application to whoever you want on the Internet, without

Claude SIMON 215 Dec 28, 2022
This repository contains some projects that I have done using Python + Tkinter.

This repository contains some projects that I have done using Python + Tkinter.

João Victor Vilela dos Santos 1 Nov 10, 2021
A simple desktop news application written using python created using PyQt5

News-Application---Python This is a news application created using PyQt5. News is fetched through API from newsapi.org. Available top headlines from c

Sritiman Adak 1 Nov 14, 2021
GUIOfTemperatureConverterUsingPython - GUI Of Temperature Converter Using Python

Fahrenheit To Celcius GUI Of Temperature Converter Below Video is the Output Of

SUJITHA RASAMSETTY 0 Mar 06, 2022
Verify file hashes of downloaded files easily in a GUI

HASH-verify Verify file hashes of downloaded files easily in a GUI What it does... This gui based Python3 app calculates 3 types of file hashes and ca

Christian Richter-Pedersen 10 Dec 13, 2022
PyEditor - A Simple Text Editor for python

PyEditor work in progress Text Editor for python Installation git clone https://github.com/ArmenG888/PyEditor Install the libraries Linux or mac pip

ArmenG 3 Mar 15, 2022
A GUI calculator made with tkinter module in python

GUI-Calculator A GUI calculator made with tkinter module in python How to setup the calculator If pygame is not installed, go to terminal and do pip i

Eric Jing 0 Aug 25, 2021
HDLG is a modern cross-platform GUI for hdl-dump with Batch installation capabilities.

HDLG is a modern cross-platform GUI for hdl-dump with Batch installation capabilities. Looking for Artwork This project is looking for an Icon an

8 Dec 03, 2022
Py address book gui - An address book with graphical user interface developed with Python Tkinter

py_address_book_gui An address book with graphical user interface developed with

Milton 4 Feb 01, 2022
Python Web Version 3.0 Using PyQty module

Python-Web-Version-3.0 Python Web Version 3.0 Using PyQty module you have to install pyinstaller module then install PyQt5 module and install PyQtwebE

JehanKandy 9 Jul 13, 2022
Write desktop and web apps in pure Python

Flexx Want to stay up-to-date about (changes to) Flexx? Subscribe to the NEWS issue. Introduction Flexx is a pure Python toolkit for creating graphica

flexxui 3.1k Dec 29, 2022
Primeira interface (simples) desenvolvida em Python utilizando o PySimpleGUI

Interface-Python Sobre o projeto Primeira interface gráfica (simples) desenvolvida em Python utilizando o PySimpleGUI Interface Gráfica Tecnologias ut

Matheus Maia Alvarez 5 Apr 09, 2022
Browser - A GTK browser trying to follow the GNOME Human Interface Guidelines.

A simple GTK browser trying to follow the GNOME Human Interface Guidelines.

Cleo Menezes 12 Nov 26, 2022
Aplicação GUI feita em Python para estudos de cadastro (forms).

Cadastro de DEVs GUI 💻 A ideia original veio do repositório do https://github.com/PedroTomazeti nomeado 'Projetos-Independentes-HTML-CSS' Nele há um

Yago Goltara 3 Aug 15, 2021
Write interactive web app in script way.

PyWebIO Write interactive web app in script way. [Document] | [Demos] | [Why PyWebIO?] English | 中文 PyWebIO provides a series of imperative functions

PyWebIO 3.6k Dec 31, 2022
Dear PyGui: A fast and powerful Graphical User Interface Toolkit for Python with minimal dependencies

(This library is available under a free and permissive license however, if you Enjoy Dear PyGui please consider becoming a Sponsor) Dear PyGui is a si

Jonathan Hoffstadt 9.4k Jan 04, 2023
A simple alarm-clock created using Python and Kivy.

Alarm-Clock made with Python and Kivy. A simple alarm-clock created using Python and Kivy. See the time. Set a maximum of 5 alarms. Cancel alarms. Not

Caio 2 Jul 31, 2022
Awesome examples for my Sun Valley ttk theme!

Sun Valley ttk theme examples This is the examples repo for my stunning Sun Valley ttk theme! Be sure to start and atch this repo, because I will uplo

rdbende 117 Jan 03, 2023