Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

Related tags

Miscellaneouscodon_optimize_cds_with_many_taxids_singlefasta
Overview

codon_optimize_cds_with_many_taxids_singlefasta DOI

Linux GUI app to codon optimize many single-fasta files with coding sequences, using many taxonomy ids

Depedences

  1. linux OS (tested on ubuntu 20.04 LTS)
  2. python 3.8.2 or later
  3. anaconda or miniconda
  4. Gooey conda install -c conda-forge gooey(if you get errors during installation or runtime try installing gtk sudo apt-get install libgtk-3-dev)
  5. biopython pip install biopython
  6. pandas pip install pandas
  7. dnachisel pip install dnachisel

linux desktop app installation

  1. open a linux text editor and edit in the python file the shebang line (to find where python is type in the terminal which python3)
  2. convert to executable with chmod +x codon_optimize_cds_with_many_taxidS_singlefasta_gui.py
  3. open a linux text editor and edit the PATHs in the .desktop file
  4. move the file to /usr/share/applications
  5. reboot your machine

Output

The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy ids of the organisms they are codon optimized for

You might also like...
A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI. Even For Admin Panel

Love-Calculator A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI, even For Adm

Adithya Krishnan 1 Mar 22, 2022
Pardus-flatpak-gui - A Flatpak GUI for Pardus
Pardus-flatpak-gui - A Flatpak GUI for Pardus

Pardus Flatpak GUI A GUI for Flatpak. You can run, install (from FlatHub and fro

Erdem Ersoy 2 Feb 17, 2022
Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.
Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.

What is Craxk ? Craxk is a UNIQUE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reprod

null 5 Jun 19, 2021
Linux Pressure Stall Information (PSI) Status App
Linux Pressure Stall Information (PSI) Status App

Linux Pressure Stall Information (PSI) Status App psistat is a simple python3 program to display the PSIs and to capture/display exception events. psi

Joe D 3 Sep 18, 2022
Explore related sequences in the OEIS

OEIS explorer This is a tool for exploring two different kinds of relationships between sequences in the OEIS: mentions (links) of other sequences on

Alex Hall 6 Mar 15, 2022
Annotates sequences with Eggnog-mapper and hhblits against PDB70

Annotating "hypothetical" proteins with the PDB See config/ for configuration information. This workflow takes as input a set of protein sequences. It

null 1 Apr 5, 2022
Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a local folder

Ingestinator Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a

Henry Wilkinson 2 Nov 18, 2022
Tuple-sum-filter - Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo

Tuple Sum Filter A library to play with filtering numeric sequences by sums of t

Laurence Billingham 1 Feb 16, 2022
This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.
This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.

BrightNetworkUK-GCC-2021 This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021. Language used here is py

Dareer Ahmad Mufti 28 May 23, 2022
Releases(v1.0)
Owner
Olga Tsiouri
Biochemist & Biotechnologist. PhD candidate at @plant_env, @uth.gr #bioinformatics, plant-fungal omics
Olga Tsiouri
GitHub Repository
Implementation of the Folders📂 esoteric programming language, a language with no code and just folders.

Folders.py Folders is an esoteric programming language, created by Daniel Temkin in 2015, which encodes the program entirely into the directory struct

Sina Khalili 425 Dec 17, 2022
A basic layout of atm working of my local database

Software for working Banking service 😄 This project was developed for Banking service. mysql server is required To have mysql server on your system u

satya 1 Oct 21, 2021
This is a working model for which I have used python.

Jarvis_voiceAssistance This is a working model for which I have used python. This model can: 1)Play a video or song on youtube. 2)Tell us time. 3)Tell

Hardik Jain 1 Jan 30, 2022
In the works, creating a new Chess Board and way to Play...

sWJz4Chess date started on github.com 11-13-2021 In the works, creating a new Chess Board and way to Play... starting to write this in Pygame, any ind

Shawn 2 Nov 18, 2021
An Airflow operator to call the main function from the dbt-core Python package

airflow-dbt-python An Airflow operator to call the main function from the dbt-core Python package Motivation Airflow running in a managed environment

Tomás Farías Santana 93 Jan 08, 2023
Create N Share is a No Code solution which gives users the ability to create any type of feature rich survey forms with ease.

create n share Note : The Project Scaffold will be pushed soon. Create N Share is a No Code solution which gives users the ability to create any type

Chiraag Kakar 11 Dec 03, 2022
Cash in on Expressed Barcode Tags (EBTs) from NGS Sequencing Data with Python

Cash in on Expressed Barcode Tags (EBTs) from NGS Sequencing Data with Python Cashier is a tool developed by Russell Durrett for the analysis and extr

3 Sep 11, 2022
A Microsoft reward automator, designed to work headless on a raspberry pi

MsReward A Microsoft reward automator, designed to work headless on a raspberry pi. Tested with a pi 3b+ and a pi 4 2Gb . Using a discord bot to log e

10 Dec 21, 2022
A performant state estimator for power system

A state estimator for power system. Turbocharged with sparse matrix support, JIT, SIMD and improved ordering.

9 Dec 12, 2022
Software that extracts spreadsheets from various .pdf files to .csv

Extração de planilhas de diversos arquivos .pdf para .csv O código inteiro foi desenvolvido em Python. Foi utilizado o pacote "tabula" e a biblioteca

Marcos Silva 2 Jan 09, 2022
Collie is for uncovering RDMA NIC performance anomalies

Collie is for uncovering RDMA NIC performance anomalies. Overview Prerequ

Bytedance Inc. 34 Dec 11, 2022
SimilarWeb for Team ACT v.0.0.1

SimilarWeb for Team ACT v.0.0.1 This module has been built to provide a better environment specifically for Similarweb in Team ACT. This module itself

Sunkyeong Lee 0 Dec 29, 2021
Script para generar automatización de registro de formularios IEEH

Formularios_IEEH Script para generar automatización de registro de formularios IEEH Corresponde a un conjunto de script en python que permiten la auto

vhevia11 1 Jan 06, 2022
Python script for changing the SSH banner content with other content

Banner-changer-py Python script for changing the SSH banner content with other content. The Script will take the content of a specified file range and

2 Nov 23, 2021
BlackIP-Rep is a tool designed to gather the reputation and information of Bulk IP's.

BlackIP-Rep is a tool designed to gather the reputation and information of Bulk IP's. Focused on increasing the workflow of Security Operations(SOC) team during investigation.

0LiVEr 6 Dec 12, 2022
💘 Write any Python with 9 Characters: e,x,c,h,r,(,+,1,)

💘 PyFuck exchr(+1) PyFuck is a strange playful code. It uses only nine different characters to write Python3 code. Inspired by aemkei/jsfuck Example

Satoki 10 Dec 25, 2022
Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.

napari-pymeshlab Interfaces between napari and the pymeshlab library to allow import, export and construction of surfaces. This is a WIP and feature r

Zach Marin 4 Oct 12, 2022
An implementation of an interpreter for the Brainfuck esoteric language in Python

Brainfuck Interpreter in Python An implementation of an interpreter for the Brainfuck esoteric language in Python. 🧠 The Brainfuck Language Created i

Carlos Santos 0 Feb 01, 2022
Stori QA Automation Challenge

Stori-QA-Automation-Challenge This is the repository is created for the Stori QA Intern Automation Engineer Challenge! In this you can find the Requir

Daniel Castañeda 0 Feb 20, 2022
Hoopoe - Get notified of important stuff, right away.

Hoopoe - Get notified of important stuff, right away. Report a Bug · Request a Feature . Ask a Question Table of Contents About Getting Started Prereq

Vahid Al 8 Nov 12, 2022