Source code of NeurIPS 2021 Paper ''Be Confident! Towards Trustworthy Graph Neural Networks via Confidence Calibration''

Related tags

Deep LearningCaGCN
Overview

CaGCN

This repo is for source code of NeurIPS 2021 paper "Be Confident! Towards Trustworthy Graph Neural Networks via Confidence Calibration".

Paper Link: https://arxiv.org/abs/2109.14285

Environment

  • python == 3.8.8
  • pytorch == 1.8.1
  • dgl -cuda11.1 == 0.6.1
  • networkx == 2.5
  • numpy == 1.20.2

GPU: GeForce RTX 2080 Ti

CPU: Intel(R) Xeon(R) Silver 4210 CPU @ 2.20GHz

Confidence Calibration

CaGCN

python CaGCN.py --model GCN --hidden 64 --dataset dataset --labelrate labelrate --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3
python CaGCN.py --model GAT --hidden 8 --dataset dataset --labelrate labelrate --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3
  • dataset: including [Cora, Citeseer, Pubmed], required.
  • labelrate: including [20, 40, 60], required.

e.g.,

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 20 --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3
python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 20 --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3

For CoraFull,

python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate labelrate --stage 1 --lr_for_cal 0.01 --l2_for_cal 0.03
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate labelrate --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --l2_for_cal 0.03
  • labelrate: including [20, 40, 60], required.

Uncalibrated model

python train_others.py --model GCN --hidden 64 --dataset dataset --labelrate labelrate --stage 1 
python train_others.py --model GAT --hidden 8 --dataset dataset --labelrate labelrate --stage 1 --dropout 0.6 --lr 0.005
  • dataset: including [Cora, Citeseer, Pubmed, CoraFull], required.
  • labelrate: including [20, 40, 60], required.

e.g.,

python train_others.py --model GCN --hidden 64 --dataset Cora --labelrate 20 --stage 1
python train_others.py --model GAT --hidden 8 --dataset Cora --labelrate 20 --stage 1 --dropout 0.6 --lr 0.005

Temperature scaling & Matring Scaling

python train_others.py --model GCN --scaling_method method --hidden 64 --dataset dataset --labelrate labelrate --stage 1 --lr_for_cal 0.01 --max_iter 50
python train_others.py --model GAT --scaling_method method --hidden 8 --dataset dataset --labelrate labelrate --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --max_iter 50
  • method: including [TS, MS], required.
  • dataset: including [Cora, Citeseer, Pubmed, CoraFull], required.
  • labelrate: including [20, 40, 60], required.

e.g.,

python train_others.py --model GCN --scaling_method TS --hidden 64 --dataset Cora --labelrate 20 --stage 1 --lr_for_cal 0.01 --max_iter 50
python train_others.py --model GAT --scaling_method TS --hidden 8 --dataset Cora --labelrate 20 --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --max_iter 50

Self-Training

GCN L/C=20

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 20 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Citeseer --labelrate 20 --stage 5 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.9
python CaGCN.py --model GCN --hidden 64 --dataset Pubmed --labelrate 20 --stage 6 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate 20 --stage 4 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.85

GCN L/C=40

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 40 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Citeseer --labelrate 40 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.85
python CaGCN.py --model GCN --hidden 64 --dataset Pubmed --labelrate 40 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate 40 --stage 4 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.99

GCN L/C=60

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 60 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Citeseer --labelrate 60 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Pubmed --labelrate 60 --stage 3 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.6
python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate 60 --stage 5 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.9

GAT L/C=20

python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 20 --dropout 0.6 --lr 0.005 --stage 6 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Citeseer --labelrate 20 --dropout 0.6 --lr 0.005 --stage 3 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.7
python CaGCN.py --model GAT --hidden 8 --dataset Pubmed --labelrate 20 --dropout 0.6 --lr 0.005 --weight_decay 1e-3 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8 
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate 20 --dropout 0.6 --lr 0.005 --stage 5 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.95

GAT L/C=40

python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 40 --dropout 0.6 --lr 0.005 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.9
python CaGCN.py --model GAT --hidden 8 --dataset Citeseer --labelrate 40 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Pubmed --labelrate 40 --dropout 0.6 --lr 0.005 --weight_decay 1e-3 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8 
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate 40 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.95

GAT L/C=60

python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 60 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Citeseer --labelrate 60 --dropout 0.6 --lr 0.005 --stage 6 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Pubmed --labelrate 60 --dropout 0.6 --lr 0.005 --weight_decay 1e-3 --stage 3 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.85 
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate 60 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.95

More Parameters

For more parameters of baselines, please refer to the Parameter.md

Contact

If you have any questions, please feel free to contact me with [email protected]

Owner
GitHub Repository
Official implementation of Long-Short Transformer in PyTorch.

Long-Short Transformer (Transformer-LS) This repository hosts the code and models for the paper: Long-Short Transformer: Efficient Transformers for La

NVIDIA Corporation 198 Dec 29, 2022
Code repository for the paper "Tracking People with 3D Representations"

Tracking People with 3D Representations Code repository for the paper "Tracking People with 3D Representations" (paper link) (project site). Jathushan

Jathushan Rajasegaran 77 Dec 03, 2022
Point Cloud Registration using Representative Overlapping Points.

Point Cloud Registration using Representative Overlapping Points (ROPNet) Abstract 3D point cloud registration is a fundamental task in robotics and c

ZhuLifa 36 Dec 16, 2022
The original implementation of TNDM used in the NeurIPS 2021 paper (no longer being updated)

TNDM - Targeted Neural Dynamical Modeling Note: This code is no longer being updated. The official re-implementation can be found at: https://github.c

1 Jul 21, 2022
Scheduling BilinearRewards

Scheduling_BilinearRewards Requirement Python 3 =3.5 Structure main.py This file includes the main function. For getting the results in Figure 1, ple

junghun.kim 0 Nov 25, 2021
A booklet on machine learning systems design with exercises

Machine Learning Systems Design Read this booklet here. This booklet covers four main steps of designing a machine learning system: Project setup Data

Chip Huyen 7.6k Jan 08, 2023
AAI supports interdisciplinary research to help better understand human, animal, and artificial cognition.

AnimalAI 3 AAI supports interdisciplinary research to help better understand human, animal, and artificial cognition. It aims to support AI research t

Matthew Crosby 58 Dec 12, 2022
TensorFlow implementation of Adaptive Information Transfer Multi-task (AITM) framework. Code for the paper submitted to KDD21: Modeling the Sequential Dependence among Audience Multi-step Conversions with Multi-task Learning for Customer Acquisition.

AITM TensorFlow implementation of Adaptive Information Transfer Multi-task (AITM) framework. Code for the paper accepted by KDD21: Modeling the Sequen

Xi Dongbo 78 Nov 29, 2022
Official Implementation of LARGE: Latent-Based Regression through GAN Semantics

LARGE: Latent-Based Regression through GAN Semantics [Project Website] [Google Colab] [Paper] LARGE: Latent-Based Regression through GAN Semantics Yot

83 Dec 06, 2022
Learning Confidence for Out-of-Distribution Detection in Neural Networks

Learning Confidence Estimates for Neural Networks This repository contains the code for the paper Learning Confidence for Out-of-Distribution Detectio

235 Jan 05, 2023
Bu repo SAHI uygulamasını mantığını öğreniyoruz.

SAHI-Learn: SAHI'den Beraber Kodlamak İster Misiniz Herkese merhabalar ben Kadir Nar. SAHI kütüphanesine gönüllü geliştiriciyim. Bu repo SAHI kütüphan

Kadir Nar 11 Aug 22, 2022
Pytorch implementation for M^3L

Learning to Generalize Unseen Domains via Memory-based Multi-Source Meta-Learning for Person Re-Identification (CVPR 2021) Introduction This is the Py

Yuyang Zhao 45 Dec 26, 2022
Semi-supervised Adversarial Learning to Generate Photorealistic Face Images of New Identities from 3D Morphable Model

Semi-supervised Adversarial Learning to Generate Photorealistic Face Images of New Identities from 3D Morphable Model Baris Gecer 1, Binod Bhattarai 1

Baris Gecer 190 Dec 29, 2022
Code Release for ICCV 2021 (oral), "AdaFit: Rethinking Learning-based Normal Estimation on Point Clouds"

AdaFit: Rethinking Learning-based Normal Estimation on Point Clouds (ICCV 2021 oral) **Project Page | Arxiv ** Runsong Zhu¹, Yuan Liu², Zhen Dong¹, Te

40 Dec 30, 2022
PyTorch implementations of Generative Adversarial Networks.

This repository has gone stale as I unfortunately do not have the time to maintain it anymore. If you would like to continue the development of it as

Erik Linder-Norén 13.4k Jan 08, 2023
PyTorch Implementation of DSB for Score Based Generative Modeling. Experiments managed using Hydra.

Diffusion Schrödinger Bridge with Applications to Score-Based Generative Modeling This repository contains the implementation for the paper Diffusion

James Thornton 50 Jan 03, 2023
the code for paper "Energy-Based Open-World Uncertainty Modeling for Confidence Calibration"

EOW-Softmax This code is for the paper "Energy-Based Open-World Uncertainty Modeling for Confidence Calibration". Accepted by ICCV21. Usage Commnd exa

Yezhen Wang 36 Dec 02, 2022
Official Implementation of HRDA: Context-Aware High-Resolution Domain-Adaptive Semantic Segmentation

HRDA: Context-Aware High-Resolution Domain-Adaptive Semantic Segmentation by Lukas Hoyer, Dengxin Dai, and Luc Van Gool [Arxiv] [Paper] Overview Unsup

Lukas Hoyer 149 Dec 28, 2022
An all-in-one application to visualize multiple different local path planning algorithms

Table of Contents Table of Contents Local Planner Visualization Project (LPVP) Features Installation/Usage Local Planners Probabilistic Roadmap (PRM)

Abdur Javaid 47 Dec 30, 2022
Discord-Protect is a simple discord bot allowing you to have some security on your discord server by ordering a captcha to the user who joins your server.

Discord-Protect Discord-Protect is a simple discord bot allowing you to have some security on your discord server by ordering a captcha to the user wh

Tir Omar 2 Oct 28, 2021