A tensorflow implementation of an HMM layer

Overview

Build Status

tensorflow_hmm

Tensorflow and numpy implementations of the HMM viterbi and forward/backward algorithms.

See Keras example for an example of how to use the Keras HMMLayer.

See test_hmm.py for usage examples. Here is an excerpt of the documentation from hmm.py for reference for now.

See also viterbi_wikipedia_example.py which replicates the viterbi example on wikipedia.

class HMM(object):
    """
    A class for Hidden Markov Models.

    The model attributes are:
    - K :: the number of states
    - P :: the K by K transition matrix (from state i to state j,
        (i, j) in [1..K])
    - p0 :: the initial distribution (defaults to starting in state 0)
    """

    def __init__(self, P, p0=None):

class HMMTensorflow(HMM):
      def forward_backward(self, y):
          """
          runs forward backward algorithm on state probabilities y
      
          Arguments
          ---------
          y : np.array : shape (T, K) where T is number of timesteps and
              K is the number of states
      
          Returns
          -------
          (posterior, forward, backward)
          posterior : list of length T of tensorflow graph nodes representing
              the posterior probability of each state at each time step
          forward : list of length T of tensorflow graph nodes representing
              the forward probability of each state at each time step
          backward : list of length T of tensorflow graph nodes representing
              the backward probability of each state at each time step
          """
      
      
      def viterbi_decode(self, y, nT):
          """
          Runs viterbi decode on state probabilies y.
      
          Arguments
          ---------
          y : np.array : shape (T, K) where T is number of timesteps and
              K is the number of states
          nT : int : number of timesteps in y
      
          Returns
          -------
          (s, pathScores)
          s : list of length T of tensorflow ints : represents the most likely
              state at each time step.
          pathScores : list of length T of tensorflow tensor of length K
              each value at (t, k) is the log likliehood score in state k at
              time t.  sum(pathScores[t, :]) will not necessary == 1
          """
Owner
Zach Dwiel
Zach Dwiel
Pytorch implementation of SenFormer: Efficient Self-Ensemble Framework for Semantic Segmentation

SenFormer: Efficient Self-Ensemble Framework for Semantic Segmentation Efficient Self-Ensemble Framework for Semantic Segmentation by Walid Bousselham

61 Dec 26, 2022
A modification of Daniel Russell's notebook merged with Katherine Crowson's hq-skip-net changes

Edits made to this repo by Katherine Crowson I have added several features to this repository for use in creating higher quality generative art (featu

Paul Fishwick 10 May 07, 2022
A python package to perform same transformation to coco-annotation as performed on the image.

coco-transform-util A python package to perform same transformation to coco-annotation as performed on the image. Installation Way 1 $ git clone https

1 Jan 14, 2022
1st Solution For NeurIPS 2021 Competition on ML4CO Dual Task

KIDA: Knowledge Inheritance in Data Aggregation This project releases our 1st place solution on NeurIPS2021 ML4CO Dual Task. Slide and model weights a

MEGVII Research 24 Sep 08, 2022
A3C LSTM Atari with Pytorch plus A3G design

NEWLY ADDED A3G A NEW GPU/CPU ARCHITECTURE OF A3C FOR SUBSTANTIALLY ACCELERATED TRAINING!! RL A3C Pytorch NEWLY ADDED A3G!! New implementation of A3C

David Griffis 532 Jan 02, 2023
Full body anonymization - Realistic Full-Body Anonymization with Surface-Guided GANs

Realistic Full-Body Anonymization with Surface-Guided GANs This is the official

Håkon Hukkelås 30 Nov 18, 2022
A Data Annotation Tool for Semantic Segmentation, Object Detection and Lane Line Detection.(In Development Stage)

Data-Annotation-Tool How to Run this Tool? To run this software, follow the steps: git clone https://github.com/Autonomous-Car-Project/Data-Annotation

TiVRA AI 13 Aug 18, 2022
Repository of continual learning papers

Continual learning paper repository This repository contains an incomplete (but dynamically updated) list of papers exploring continual learning in ma

29 Jan 05, 2023
Improving Factual Completeness and Consistency of Image-to-text Radiology Report Generation

Improving Factual Completeness and Consistency of Image-to-text Radiology Report Generation The reference code of Improving Factual Completeness and C

46 Dec 15, 2022
[NeurIPS 2021] Deceive D: Adaptive Pseudo Augmentation for GAN Training with Limited Data

Deceive D: Adaptive Pseudo Augmentation for GAN Training with Limited Data (NeurIPS 2021) This repository will provide the official PyTorch implementa

Liming Jiang 238 Nov 25, 2022
Pytorch implementation of Compressive Transformers, from Deepmind

Compressive Transformer in Pytorch Pytorch implementation of Compressive Transformers, a variant of Transformer-XL with compressed memory for long-ran

Phil Wang 118 Dec 01, 2022
Pytorch implementation of "Get To The Point: Summarization with Pointer-Generator Networks"

About this repository This repo contains an Pytorch implementation for the ACL 2017 paper Get To The Point: Summarization with Pointer-Generator Netwo

wxDai 7 Oct 14, 2022
Joint Versus Independent Multiview Hashing for Cross-View Retrieval[J] (IEEE TCYB 2021, PyTorch Code)

Thanks to the low storage cost and high query speed, cross-view hashing (CVH) has been successfully used for similarity search in multimedia retrieval. However, most existing CVH methods use all view

4 Nov 19, 2022
Official implementation of "Implicit Neural Representations with Periodic Activation Functions"

Implicit Neural Representations with Periodic Activation Functions Project Page | Paper | Data Vincent Sitzmann*, Julien N. P. Martel*, Alexander W. B

Vincent Sitzmann 1.4k Jan 06, 2023
DyNet: The Dynamic Neural Network Toolkit

The Dynamic Neural Network Toolkit General Installation C++ Python Getting Started Citing Releases and Contributing General DyNet is a neural network

Chris Dyer's lab @ LTI/CMU 3.3k Jan 06, 2023
Uses OpenCV and Python Code to detect a face on the screen

Simple-Face-Detection This code uses OpenCV and Python Code to detect a face on the screen. This serves as an example program. Important prerequisites

Denis Woolley (CreepyD) 1 Feb 12, 2022
A keras implementation of ENet (abandoned for the foreseeable future)

ENet-keras This is an implementation of ENet: A Deep Neural Network Architecture for Real-Time Semantic Segmentation, ported from ENet-training (lua-t

Pavlos 115 Nov 23, 2021
SAGE: Sensitivity-guided Adaptive Learning Rate for Transformers

SAGE: Sensitivity-guided Adaptive Learning Rate for Transformers This repo contains our codes for the paper "No Parameters Left Behind: Sensitivity Gu

Chen Liang 23 Nov 07, 2022
Processed, version controlled history of Minecraft's generated data and assets

mcmeta Processed, version controlled history of Minecraft's generated data and assets Repository structure Each of the following branches has a commit

Misode 75 Dec 28, 2022
Jittor is a high-performance deep learning framework based on JIT compiling and meta-operators.

Jittor: a Just-in-time(JIT) deep learning framework Quickstart | Install | Tutorial | Chinese Jittor is a high-performance deep learning framework bas

2.7k Jan 03, 2023