Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

Overview

napari-3d-ortho-viewer

License PyPI Python Version tests codecov napari hub

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

This plugin is heavily inspired by ortho-view-napari.

Check out this post on image.sc (https://forum.image.sc/t/napari-visualization-in-3-planes/57768) for more infos about multiview support in napari.

This viewer has some additional features:

  • double click to jump to specific position in all slices
  • additional 3d view of 3d stack with lines or planes indicating current position

Installation

You can install napari-3d-ortho-viewer via pip:

pip install napari-3d-ortho-viewer

To install latest development version :

pip install git+https://github.com/gatoniel/napari-3d-ortho-viewer.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-3d-ortho-viewer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Owner
niklas netter
I started studies in physics at Philipps University Marburg in April 2016. Currently I am working at Drescher Lab in the field of image analysis and biophysics.
niklas netter
Simplest QRGenerator with a cool feature (-sh=True :D)

Simple QR-Codes Generator :D Generates QR-codes, nothing more and nothing less . How to use Just run ./install.sh to set all the dependencies up, th

RENNAARENATA 1 Dec 11, 2021
粉專/IG圖文加工器

粉專/IG圖文加工器 介紹 給PS智障(ex:我)使用,用於產生圖文 腳本省去每次重複步驟 可載入圖片(方形,請先處理過,歡迎PR) 圖片簡易套用濾鏡 可將圖片切片 要求 Python 版本 3.9 安裝 安裝最新 python pip3 install -r requirement.txt 效果

Louis Tang 7 Aug 10, 2022
An automated Comic Book downloader (cbr/cbz) for use with SABnzbd, NZBGet and torrents

Mylar Note that feature development has stopped as we have moved to Mylar3. EOL for this project is the end of 2020 and will no longer be supported. T

979 Dec 13, 2022
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

AICSImageIO Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python Features Supports reading metadata and imaging

Allen Institute for Cell Science - Modeling 137 Dec 14, 2022
Multiparametric Image Analysis

Documentation The documentation is available on populse_mia's website here Installation From PyPI, for users By cloning the package, for developers Fr

Populse 9 Dec 14, 2022
AutoGiphyMovie lets you search giphy for gifs, converts them to videos, attach a soundtrack and stitches it all together into a movie!

AutoGiphyMovie lets you search giphy for gifs, converts them to videos, attach a soundtrack and stitches it all together into a movie!

Satya Mohapatra 18 Nov 13, 2022
Program for analyzing shadows from Cassini images

Moons: An Analysis Module for Vicar Files General This packages/program was created for my bachelor's thesis for the Astronomy department at Universit

Joni 1 Jul 16, 2021
Convert bitmap images to seeds for Tiny-83 NFT project.

What is this? This tool allows you to convert any 14p high and 22p wide Bitmap (.bmp) to the seed needed for the Tiny-83 NFT project. Project Twitter:

shib_maximalist 1 Oct 31, 2021
Design custom QR codes with this web app!

My-QR.Art This web app lets users design their own QR codes to any domain. It can be acessed on my-qr.art. You can find some more background info abou

Marien Raat 406 Dec 20, 2022
A small Python module for BMP image processing.

micropython-microbmp A small Python module for BMP image processing. It supports BMP image of 1/2/4/8/24-bit colour depth. Loading supports compressio

Quan Lin 4 Nov 02, 2022
Simple Python / ImageMagick script to package images into WAD3s for use as GoldSrc textures.

WADs Out For [The] Ladies Simple Python / ImageMagick script to package images into WAD3s for use as GoldSrc textures. Development mostly focused on L

5 Apr 09, 2022
Extract the temperature data of each wire from the thermal imager raw data.

Wire-Tempurature-Detection Extract the temperature data of each wire from the thermal imager raw data. The motivation of this computer vision project

JohanAckerman 1 Nov 03, 2021
Python Image Optimizer Script

Image-Optimizer Download and Install git clone https://github.com/stefankumpan/Image-Optimizer-Script.git cd Image-Optimizer-Script pip install -r req

Stefan Kumpan 0 Jul 15, 2021
Simple mathematical operations on image, point and surface layers.

napari-math This package provides a GUI interfrace for simple mathematical operations on image, point and surface layers. addition subtraction multipl

Zach Marin 2 Jan 18, 2022
Water marker for images.

watermarker linux users: To fix this error,please add truetype font path File "watermark.py", line 58, in module font = ImageFont.truetype("Dro

13 Oct 27, 2022
Simple Python package to convert an image into a quantized image using a customizable palette

Simple Python package to convert an image into a quantized image using a customizable palette. Resulting image can be displayed by ePaper displays such as Waveshare displays.

Luis Obis 3 Apr 13, 2022
Image comparison slider component for Streamlit

Streamlit Image Comparison Component A simple Streamlit Component to compare images with a slider in Streamlit apps using Knightlab's JuxtaposeJS. It

fatih 109 Dec 23, 2022
A Gtk based Image Selector with Preview

gtk-image-selector This is an attempt to restore Gtk Image Chooser "lost functionality": displaying an image preview when selecting images... This is

Spiros Georgaras 2 Sep 28, 2022
Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation.

Description Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation. Double cl

David Meijer 1 Dec 02, 2021
HCaptcha solver using requests and an image recognition package!

HCaptcha solver using requests and an image recognition package! Report Bug · Request Feature Features Image recognition Requests base

dropout 6 Oct 22, 2021