A way of looking at COVID-19 data that I haven't seen before.

Overview

Visualizing Omicron: COVID-19 Deaths vs. Cases

Click here for other countries.

Data is from Our World in Data/Johns Hopkins University.

About this project

For most of the COVID-19 pandemic, the daily focus has been on the number of cases. This still seems to be true as the omicron wave hits.

But omicron on the whole has been much milder. For those who have been recently doubly or triple vaccinated and/or recently infected and are free from underlying comorbidities (of which the list is long), the risk of death is very small. The primary risk of this phase of the pandemic is of those not in the above groups getting sick all at once, overwhelming available hospital beds, while the healthcare workforce is itself depleted as workers quarantine or are at home suffering (usually mild) symptoms.

Here we explore an interesting way to visualize differences in the various waves of the pandemic: plotting deaths as a function of cases.

It suggests that omicron is indeed quite different.

The notebook shows plots for many countries. The main function should be self-contained enough for you to copy and paste and use to plot data for any country you like.

The data is from https://github.com/owid/covid-19-data, specifically from JHU (public > data > jhu). The usual caveats apply, including completeness from some countries and deaths with vs. of COVID-19 (incidental vs. causative).

Please use as you see fit, as long as it's with attribution.

Ramy Arnaout, MD, DPhil / Boston, MA / January 8, 2022

simple tool to paint axis x and y

simple tool to paint axis x and y

G705 1 Oct 21, 2021
Create Badges with stats of Scratch User, Project and Studio. Use those badges in Github readmes, etc.

Scratch-Stats-Badge Create customized Badges with stats of Scratch User, Studio or Project. Use those badges in Github readmes, etc. Examples Document

Siddhesh Chavan 5 Aug 28, 2022
Create HTML profiling reports from pandas DataFrame objects

Pandas Profiling Documentation | Slack | Stack Overflow Generates profile reports from a pandas DataFrame. The pandas df.describe() function is great

10k Jan 01, 2023
Python package for hypergraph analysis and visualization.

The HyperNetX library provides classes and methods for the analysis and visualization of complex network data. HyperNetX uses data structures designed to represent set systems containing nested data

Pacific Northwest National Laboratory 304 Dec 27, 2022
DrawBot lets you draw images taken from the internet on Skribbl.io, Gartic Phone and Paint

DrawBot You don't speak french? No worries, english translation is over here. C'est quoi ? DrawBot est un logiciel codé par V2F qui va prendre possess

V2F 205 Jan 01, 2023
Simple, realtime visualization of neural network training performance.

pastalog Simple, realtime visualization server for training neural networks. Use with Lasagne, Keras, Tensorflow, Torch, Theano, and basically everyth

Rewon Child 416 Dec 29, 2022
Parallel t-SNE implementation with Python and Torch wrappers.

Multicore t-SNE This is a multicore modification of Barnes-Hut t-SNE by L. Van der Maaten with python and Torch CFFI-based wrappers. This code also wo

Dmitry Ulyanov 1.7k Jan 09, 2023
A collection of 100 Deep Learning images and visualizations

A collection of Deep Learning images and visualizations. The project has been developed by the AI Summer team and currently contains almost 100 images.

AI Summer 65 Sep 12, 2022
This repository contains a streaming Dataflow pipeline written in Python with Apache Beam, reading data from PubSub.

Sample streaming Dataflow pipeline written in Python This repository contains a streaming Dataflow pipeline written in Python with Apache Beam, readin

Israel Herraiz 9 Mar 18, 2022
Matplotlib JOTA style for making figures

Matplotlib JOTA style for making figures This repo has Matplotlib JOTA style to format plots and figures for publications and presentation.

JOTA JORNALISMO 2 May 05, 2022
It's an application to calculate I from v and r. It can also plot a graph between V vs I.

Ohm-s-Law-Visualizer It's an application to calculate I from v and r using Ohm's Law. It can also plot a graph between V vs I. Story I'm doing my Unde

Sihab Sahariar 1 Nov 20, 2021
Rockstar - Makes you a Rockstar C++ Programmer in 2 minutes

Rockstar Rockstar is one amazing library, which will make you a Rockstar Programmer in just 2 minutes. In last decade, people learned C++ in 21 days.

4k Jan 05, 2023
Curvipy - The Python package for visualizing curves and linear transformations in a super simple way

Curvipy - The Python package for visualizing curves and linear transformations in a super simple way

Dylan Tintenfich 55 Dec 28, 2022
A python script editor for napari based on PyQode.

napari-script-editor A python script editor for napari based on PyQode. This napari plugin was generated with Cookiecutter using with @napari's cookie

Robert Haase 9 Sep 20, 2022
Automatic data visualization in atom with the nteract data-explorer

Data Explorer Interactively explore your data directly in atom with hydrogen! The nteract data-explorer provides automatic data visualization, so you

Ben Russert 65 Dec 01, 2022
The visual framework is designed on the idea of module and implemented by mixin method

Visual Framework The visual framework is designed on the idea of module and implemented by mixin method. Its biggest feature is the mixins module whic

LEFTeyes 9 Sep 19, 2022
🎨 Python Echarts Plotting Library

pyecharts Python ❤️ ECharts = pyecharts English README 📣 简介 Apache ECharts (incubating) 是一个由百度开源的数据可视化,凭借着良好的交互性,精巧的图表设计,得到了众多开发者的认可。而 Python 是一门富有表达

pyecharts 13.1k Jan 03, 2023
HM02: Visualizing Interesting Datasets

HM02: Visualizing Interesting Datasets This is a homework assignment for CSCI 40 class at Claremont McKenna College. Go to the project page to learn m

Qiaoling Chen 11 Oct 26, 2021
Statistics and Visualization of acceptance rate, main keyword of CVPR 2021 accepted papers for the main Computer Vision conference (CVPR)

Statistics and Visualization of acceptance rate, main keyword of CVPR 2021 accepted papers for the main Computer Vision conference (CVPR)

Hoseong Lee 78 Aug 23, 2022
A custom qq-plot for two sample data comparision

QQ-Plot 2 Sample Just a gist to include the custom code to draw a qq-plot in python when dealing with a "two sample problem". This means when u try to

1 Dec 20, 2021