MRI reconstruction (e.g., QSM) using deep learning methods

Overview

deepMRI: Deep learning methods for MRI

Authors: Yang Gao, Hongfu Sun

  • This repo is devloped based on Pytorch (1.8 or later) and matlab (R2019a or later).

  • The codes in this repo were tested on Centos 7.8 with Nvdia Tesla V100 and macos12.0.1/win10/ubuntu19.10 with GTX 1060

     

Projects

xQSM for QSM dipole inversion

DCRnet for QSM and R2* acceleration

iQSM for single-step instant QSM

     

xQSM for QSM dipole inversion

xQSM: quantitative susceptibility mapping with octave convolutional and noise-regularized neural networks

Whole Framework

source code (github)   |   arXiv (pre-print)   |   NMR in Biomed (full paper)

     

DCRNet for QSM and R2* acceleration

Accelerating quantitative susceptibility and R2* mapping using incoherent undersampling and deep neural network reconstruction

source code (github)   |   arXiv (pre-print)   |   NeuroImage (full paper)

Whole Framework

     

iQSM for single-step instant QSM

Instant tissue field and magnetic susceptibility mapping from MRI raw phase using Laplacian enabled deep neural networks

source code (github)   |   arXiv (pre-print)

Whole Framework

top

Owner
Hongfu Sun
MRI and Deep Learning researcher
Hongfu Sun
AugMix: A Simple Data Processing Method to Improve Robustness and Uncertainty

AugMix Introduction We propose AugMix, a data processing technique that mixes augmented images and enforces consistent embeddings of the augmented ima

Google Research 876 Dec 17, 2022
MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble

datasketch: Big Data Looks Small datasketch gives you probabilistic data structures that can process and search very large amount of data super fast,

Eric Zhu 1.9k Jan 07, 2023
[ICCV2021] IICNet: A Generic Framework for Reversible Image Conversion

IICNet - Invertible Image Conversion Net Official PyTorch Implementation for IICNet: A Generic Framework for Reversible Image Conversion (ICCV2021). D

felixcheng97 55 Dec 06, 2022
Semiconductor Machine learning project

Wafer Fault Detection Problem Statement: Wafer (In electronics), also called a slice or substrate, is a thin slice of semiconductor, such as a crystal

kunal suryawanshi 1 Jan 15, 2022
Tracing Versus Freehand for Evaluating Computer-Generated Drawings (SIGGRAPH 2021)

Tracing Versus Freehand for Evaluating Computer-Generated Drawings (SIGGRAPH 2021) Zeyu Wang, Sherry Qiu, Nicole Feng, Holly Rushmeier, Leonard McMill

Zach Zeyu Wang 23 Dec 09, 2022
PyGCL: A PyTorch Library for Graph Contrastive Learning

PyGCL is a PyTorch-based open-source Graph Contrastive Learning (GCL) library, which features modularized GCL components from published papers, standa

PyGCL 588 Dec 31, 2022
A wrapper around SageMaker ML Lineage Tracking extending ML Lineage to end-to-end ML lifecycles, including additional capabilities around Feature Store groups, queries, and other relevant artifacts.

ML Lineage Helper This library is a wrapper around the SageMaker SDK to support ease of lineage tracking across the ML lifecycle. Lineage artifacts in

AWS Samples 12 Nov 01, 2022
Text-to-Music Retrieval using Pre-defined/Data-driven Emotion Embeddings

Text2Music Emotion Embedding Text-to-Music Retrieval using Pre-defined/Data-driven Emotion Embeddings Reference Emotion Embedding Spaces for Matching

Minz Won 50 Dec 05, 2022
STYLER: Style Factor Modeling with Rapidity and Robustness via Speech Decomposition for Expressive and Controllable Neural Text to Speech

STYLER: Style Factor Modeling with Rapidity and Robustness via Speech Decomposition for Expressive and Controllable Neural Text to Speech Keon Lee, Ky

Keon Lee 114 Dec 12, 2022
CIFAR-10_train-test - training and testing codes for dataset CIFAR-10

CIFAR-10_train-test - training and testing codes for dataset CIFAR-10

Frederick Wang 3 Apr 26, 2022
AI Summer's complete catalog of articles

Learn Deep Learning with AI Summer A collection of all articles (almost 100) written for the AI Summer blog organized by topic. Deep Learning Theory M

AI Summer 95 Dec 29, 2022
This repository contains code to run experiments in the paper "Signal Strength and Noise Drive Feature Preference in CNN Image Classifiers."

Signal Strength and Noise Drive Feature Preference in CNN Image Classifiers This repository contains code to run experiments in the paper "Signal Stre

0 Jan 19, 2022
Agent-based model simulator for air quality and pandemic risk assessment in architectural spaces

Agent-based model simulation for air quality and pandemic risk assessment in architectural spaces. User Guide archABM is a fast and open source agent-

Vicomtech 10 Dec 05, 2022
Pytorch implementation of Zero-DCE++

Zero-DCE++ You can find more details here: https://li-chongyi.github.io/Proj_Zero-DCE++.html. You can find the details of our CVPR version: https://li

Chongyi Li 157 Dec 23, 2022
Stacked Recurrent Hourglass Network for Stereo Matching

SRH-Net: Stacked Recurrent Hourglass Introduction This repository is supplementary material of our RA-L submission, which helps reviewers to understan

28 Jan 03, 2023
A PyTorch implementation of "DGC-Net: Dense Geometric Correspondence Network"

DGC-Net: Dense Geometric Correspondence Network This is a PyTorch implementation of our work "DGC-Net: Dense Geometric Correspondence Network" TL;DR A

191 Dec 16, 2022
Official implementation of "UCTransNet: Rethinking the Skip Connections in U-Net from a Channel-wise Perspective with Transformer"

[AAAI2022] UCTransNet This repo is the official implementation of "UCTransNet: Rethinking the Skip Connections in U-Net from a Channel-wise Perspectiv

Haonan Wang 199 Jan 03, 2023
Instance Segmentation in 3D Scenes using Semantic Superpoint Tree Networks

SSTNet Instance Segmentation in 3D Scenes using Semantic Superpoint Tree Networks(ICCV2021) by Zhihao Liang, Zhihao Li, Songcen Xu, Mingkui Tan, Kui J

83 Nov 29, 2022
Yet Another Reinforcement Learning Tutorial

This repo contains self-contained RL implementations

Sungjoon 65 Dec 10, 2022