Modular analysis tools for neurophysiology data

Overview

Neuroanalysis

Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology.

  • Functions for running common analysis algorithms
    • Synaptic/calcium event detection and characterization
    • Synaptic release modeling
    • VC and CC spike detection and characterization
    • VC and CC test pulse analysis
    • Basic signal processing (filtering, baseline removal, etc.)
  • Data abstraction layer to allow adapting new data formats (see neuroanalysis/data.py)
  • Re-usable user interface elements for implementing common analysis tasks

Status

This project is early in development and does not yet have a stable API. Issues and pull requests are accepted (see CONTRIBUTING.md), but may not be reviewed or accepted on any fixed schedule.

Owner
Allen Institute
Please visit http://alleninstitute.github.io/ for more information.
Allen Institute
First steps with Python in Life Sciences

First steps with Python in Life Sciences This course material is part of the "First Steps with Python in Life Science" three-day course of SIB-trainin

SIB Swiss Institute of Bioinformatics 22 Jan 08, 2023
Finding project directories in Python (data science) projects, just like there R rprojroot and here packages

Find relative paths from a project root directory Finding project directories in Python (data science) projects, just like there R here and rprojroot

Daniel Chen 102 Nov 16, 2022
Bigdata Simulation Library Of Dream By Sandman Books

BIGDATA SIMULATION LIBRARY OF DREAM BY SANDMAN BOOKS ================= Solution Architecture Description In the realm of Dreaming, its ruler SANDMAN,

Maycon Cypriano 3 Jun 30, 2022
Statistical Rethinking: A Bayesian Course Using CmdStanPy and Plotnine

Statistical Rethinking: A Bayesian Course Using CmdStanPy and Plotnine Intro This repo contains the python/stan version of the Statistical Rethinking

Andrés Suárez 3 Nov 08, 2022
WaveFake: A Data Set to Facilitate Audio DeepFake Detection

WaveFake: A Data Set to Facilitate Audio DeepFake Detection This is the code repository for our NeurIPS 2021 (Track on Datasets and Benchmarks) paper

Chair for Sys­tems Se­cu­ri­ty 27 Dec 22, 2022
Data Analytics on Genomes and Genetics

Data Analytics performed on On genomes and Genetics dataset to predict genetic disorder and disorder subclass. DONE by TEAM SIGMA!

1 Jan 12, 2022
:truck: Agile Data Preparation Workflows made easy with dask, cudf, dask_cudf and pyspark

To launch a live notebook server to test optimus using binder or Colab, click on one of the following badges: Optimus is the missing framework to prof

Iron 1.3k Dec 30, 2022
This repo is dedicated to the data extraction and manipulation of the World Bank's database called STEP.

Overview Welcome to the Step-X repository. This repo is dedicated to the data extraction and manipulation of the World Bank's database called STEP. Be

Keanu Pang 0 Jan 20, 2022
Gaussian processes in TensorFlow

Website | Documentation (release) | Documentation (develop) | Glossary Table of Contents What does GPflow do? Installation Getting Started with GPflow

GPflow 1.7k Jan 06, 2023
An orchestration platform for the development, production, and observation of data assets.

Dagster An orchestration platform for the development, production, and observation of data assets. Dagster lets you define jobs in terms of the data f

Dagster 6.2k Jan 08, 2023
A tool to compare differences between dataframes and create a differences report in Excel

similarpanda A module to check for differences between pandas Dataframes, and generate a report in Excel format. This is helpful in a workplace settin

Andre Pretorius 9 Sep 15, 2022
Uses MIT/MEDSL, New York Times, and US Census datasources to analyze per-county COVID-19 deaths.

Covid County Executive summary Setup Install miniconda, then in the command line, run conda create -n covid-county conda activate covid-county conda i

Ahmed Fasih 1 Dec 22, 2021
This is a python script to navigate and extract the FSD50K dataset

FSD50K navigator This is a script I use to navigate the sound dataset from FSK50K.

sweemeng 2 Nov 23, 2021
PostQF is a user-friendly Postfix queue data filter which operates on data produced by postqueue -j.

PostQF Copyright © 2022 Ralph Seichter PostQF is a user-friendly Postfix queue data filter which operates on data produced by postqueue -j. See the ma

Ralph Seichter 11 Nov 24, 2022
Show you how to integrate Zeppelin with Airflow

Introduction This repository is to show you how to integrate Zeppelin with Airflow. The philosophy behind the ingtegration is to make the transition f

Jeff Zhang 11 Dec 30, 2022
Pip install minimal-pandas-api-for-polars

Minimal Pandas API for Polars Install From PyPI: pip install minimal-pandas-api-for-polars Example Usage (see tests/test_minimal_pandas_api_for_polars

Austin Ray 6 Oct 16, 2022
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

Blue Collar Bioinformatics 917 Jan 03, 2023
pandas: powerful Python data analysis toolkit

pandas is a Python package that provides fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive.

pandas 36.4k Jan 03, 2023
Fitting thermodynamic models with pycalphad

ESPEI ESPEI, or Extensible Self-optimizing Phase Equilibria Infrastructure, is a tool for thermodynamic database development within the CALPHAD method

Phases Research Lab 42 Sep 12, 2022