Modular analysis tools for neurophysiology data

Overview

Neuroanalysis

Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology.

  • Functions for running common analysis algorithms
    • Synaptic/calcium event detection and characterization
    • Synaptic release modeling
    • VC and CC spike detection and characterization
    • VC and CC test pulse analysis
    • Basic signal processing (filtering, baseline removal, etc.)
  • Data abstraction layer to allow adapting new data formats (see neuroanalysis/data.py)
  • Re-usable user interface elements for implementing common analysis tasks

Status

This project is early in development and does not yet have a stable API. Issues and pull requests are accepted (see CONTRIBUTING.md), but may not be reviewed or accepted on any fixed schedule.

Owner
Allen Institute
Please visit http://alleninstitute.github.io/ for more information.
Allen Institute
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