A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.

Overview

meddlr

Getting Started

Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems.

Installation

To avoid cuda-related issues, downloading torch, torchvision, and cupy (optional) must be done prior to downloading other requirements.

# Create and activate the environment.
conda create -n meddlr_env python=3.7
conda activate meddlr_env

# Install cuda-dependant libraries. Change cuda version as needed.
# Below we show examples for cuda-10.1
conda install pytorch torchvision cudatoolkit=10.1 -c pytorch
pip install cupy-cuda101

# Install as package in virtual environment (recommended):
git clone https://github.com/ad12/meddlr.git
cd dl-ss-recon && python -m pip install -e '.[dev]'

# For all contributors, install development packages.
make dev

Contributing

See CONTRIBUTING.md for more information.

Acknowledgements

Meddlr's design for rapid experimentation and benchmarking is inspired by detectron2.

About

If you use Meddlr for your work, please consider citing the following work:

@article{desai2021noise2recon,
  title={Noise2Recon: A Semi-Supervised Framework for Joint MRI Reconstruction and Denoising},
  author={Desai, Arjun D and Ozturkler, Batu M and Sandino, Christopher M and Vasanawala, Shreyas and Hargreaves, Brian A and Re, Christopher M and Pauly, John M and Chaudhari, Akshay S},
  journal={arXiv preprint arXiv:2110.00075},
  year={2021}
}
Owner
Arjun Desai
Arjun Desai
K-Nearest Neighbor in Pytorch

Pytorch KNN CUDA 2019/11/02 This repository will no longer be maintained as pytorch supports sort() and kthvalue on tensors. git clone https://github.

Chris Choy 65 Dec 01, 2022
Attention-based CNN-LSTM and XGBoost hybrid model for stock prediction

Attention-based CNN-LSTM and XGBoost hybrid model for stock prediction Requirements The code has been tested running under Python 3.7.4, with the foll

zshicode 84 Jan 01, 2023
In this project, we develop a face recognize platform based on MTCNN object-detection netcwork and FaceNet self-supervised network.

模式识别大作业——人脸检测与识别平台 本项目是一个简易的人脸检测识别平台,提供了人脸信息录入和人脸识别的功能。前端采用 html+css+js,后端采用 pytorch,

Xuhua Huang 5 Aug 02, 2022
Code accompanying the paper Shared Independent Component Analysis for Multi-subject Neuroimaging

ShICA Code accompanying the paper Shared Independent Component Analysis for Multi-subject Neuroimaging Install Move into the ShICA directory cd ShICA

8 Nov 07, 2022
Semi-Supervised Learning, Object Detection, ICCV2021

End-to-End Semi-Supervised Object Detection with Soft Teacher By Mengde Xu*, Zheng Zhang*, Han Hu, Jianfeng Wang, Lijuan Wang, Fangyun Wei, Xiang Bai,

Microsoft 789 Dec 27, 2022
An offline deep reinforcement learning library

d3rlpy: An offline deep reinforcement learning library d3rlpy is an offline deep reinforcement learning library for practitioners and researchers. imp

Takuma Seno 817 Jan 02, 2023
Official code for our CVPR '22 paper "Dataset Distillation by Matching Training Trajectories"

Dataset Distillation by Matching Training Trajectories Project Page | Paper This repo contains code for training expert trajectories and distilling sy

George Cazenavette 256 Jan 05, 2023
LF-YOLO (Lighter and Faster YOLO) is used to detect defect of X-ray weld image.

This project is based on ultralytics/yolov3. LF-YOLO (Lighter and Faster YOLO) is used to detect defect of X-ray weld image. The related paper is avai

26 Dec 13, 2022
Learnable Motion Coherence for Correspondence Pruning

Learnable Motion Coherence for Correspondence Pruning Yuan Liu, Lingjie Liu, Cheng Lin, Zhen Dong, Wenping Wang Project Page Any questions or discussi

liuyuan 41 Nov 30, 2022
DIR-GNN - Discovering Invariant Rationales for Graph Neural Networks

DIR-GNN "Discovering Invariant Rationales for Graph Neural Networks" (ICLR 2022)

Ying-Xin (Shirley) Wu 70 Nov 13, 2022
Exploiting a Zoo of Checkpoints for Unseen Tasks

Exploiting a Zoo of Checkpoints for Unseen Tasks This repo includes code to reproduce all results in the above Neurips paper, authored by Jiaji Huang,

Baidu Research 8 Sep 06, 2022
Unofficial pytorch implementation of 'Arbitrary Style Transfer in Real-time with Adaptive Instance Normalization'

pytorch-AdaIN This is an unofficial pytorch implementation of a paper, Arbitrary Style Transfer in Real-time with Adaptive Instance Normalization [Hua

Naoto Inoue 873 Jan 06, 2023
Oscar and VinVL

Oscar: Object-Semantics Aligned Pre-training for Vision-and-Language Tasks VinVL: Revisiting Visual Representations in Vision-Language Models Updates

Microsoft 938 Dec 26, 2022
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

Apache MXNet (incubating) for Deep Learning Apache MXNet is a deep learning framework designed for both efficiency and flexibility. It allows you to m

The Apache Software Foundation 20.2k Jan 08, 2023
PyTorch version repo for CSRNet: Dilated Convolutional Neural Networks for Understanding the Highly Congested Scenes

Study-CSRNet-pytorch This is the PyTorch version repo for CSRNet: Dilated Convolutional Neural Networks for Understanding the Highly Congested Scenes

0 Mar 01, 2022
[ICCV 2021] Self-supervised Monocular Depth Estimation for All Day Images using Domain Separation

ADDS-DepthNet This is the official implementation of the paper Self-supervised Monocular Depth Estimation for All Day Images using Domain Separation I

LIU_LINA 52 Nov 24, 2022
Learning 3D Part Assembly from a Single Image

Learning 3D Part Assembly from a Single Image This repository contains a PyTorch implementation of the paper: Learning 3D Part Assembly from A Single

18 Dec 21, 2022
SwinTrack: A Simple and Strong Baseline for Transformer Tracking

SwinTrack This is the official repo for SwinTrack. A Simple and Strong Baseline Prerequisites Environment conda (recommended) conda create -y -n SwinT

LitingLin 196 Jan 04, 2023
Boost learning for GNNs from the graph structure under challenging heterophily settings. (NeurIPS'20)

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs Jiong Zhu, Yujun Yan, Lingxiao Zhao, Mark Heimann, Leman Akoglu,

GEMS Lab: Graph Exploration & Mining at Scale, University of Michigan 70 Dec 18, 2022
Pipeline for employing a Lightweight deep learning models for LOW-power systems

PL-LOW A high-performance deep learning model lightweight pipeline that gradually lightens deep neural networks in order to utilize high-performance d

POSTECH Data Intelligence Lab 9 Aug 13, 2022