A python library to build Model Trees with Linear Models at the leaves.

Overview

linear-tree

A python library to build Model Trees with Linear Models at the leaves.

Overview

Linear Model Trees combine the learning ability of Decision Tree with the predictive and explicative power of Linear Models. Like in tree-based algorithms, the data are split according to simple decision rules. The goodness of slits is evaluated in gain terms fitting Linear Models in the nodes. This implies that the models in the leaves are linear instead of constant approximations like in classical Decision Trees.

linear-tree is developed to be fully integrable with scikit-learn. LinearTreeRegressor and LinearTreeClassifier are provided as scikit-learn BaseEstimator. They are wrappers that build a decision tree on the data fitting a linear estimator from sklearn.linear_model. All the models available in sklearn.linear_model can be used as linear estimators.

Installation

pip install linear-tree

The module depends on NumPy, SciPy and Scikit-Learn (>=0.23.0). Python 3.6 or above is supported.

Media

Usage

Regression
from sklearn.linear_model import LinearRegression
from lineartree import LinearTreeRegressor
from sklearn.datasets import make_regression
X, y = make_regression(n_samples=100, n_features=4,
                       n_informative=2, n_targets=1,
                       random_state=0, shuffle=False)
regr = LinearTreeRegressor(base_estimator=LinearRegression())
regr.fit(X, y)
Classification
from sklearn.linear_model import RidgeClassifier
from lineartree import LinearTreeClassifier
from sklearn.datasets import make_classification
X, y = make_classification(n_samples=100, n_features=4,
                           n_informative=2, n_redundant=0,
                           random_state=0, shuffle=False)
clf = LinearTreeClassifier(base_estimator=RidgeClassifier())
clf.fit(X, y)

More examples in the notebooks folder.

Check the API Reference to see the parameter configurations and the available methods.

Examples

Show the model tree structure:

plot tree

Linear Tree Regressor at work:

linear tree regressor

Linear Tree Classifier at work:

linear tree classifier

Extract and examine coefficients at the leaves:

leaf coefficients

Comments
  • finding breakpoint

    finding breakpoint

    Hello,

    thank you for your nice tool. I am using the function LinearTreeRegressor to draw a continuous piecewise linear. It works well, I am wondering, is it possible to show the location (the coordinates) of the breakpoints?

    thank you

    opened by ZhengLiu1119 5
  • Allow the hyperparameter

    Allow the hyperparameter "max_depth = 0".

    Thanks for the good library.

    When using LinearTreeRegressor, I think that max_depth is often optimized by cross-validation.

    This library allows max_depth in the range 1-20. However, depending on the dataset, simple linear regression may be suitable. Even in such a dataset, max_depth is forced to be 1 or more, so Simple Linear Regression cannot be applied properly with LinearTreeRegressor.

    • Of course, it is appropriate to use sklearn.linear_model.LinearRegression for such datasets.

    My suggestion is to change to a program that uses base_estimator to perform regression when "max_depth = 0". With this change, LinearTreeRegressor can flexibly respond to both segmented regression and simple regression by changing hyperparameters.

    opened by jckkvs 4
  • Error when running with multiple jobs: unexpected keyword argument 'target_offload'

    Error when running with multiple jobs: unexpected keyword argument 'target_offload'

    I have been using your library for quite a while and am super happy with it. So first, thanks a lot!

    Lately, I used my framework (which also uses your library) on modern many core server with many jobs. Worked fine. Now I have updated everything via pip and with 8 jobs on my MacBook, I got the following error.

    This error does not occur when using only a single job (I pass the number of jobs to n_jobs).

    I cannot nail the down the actual problem, but since it occurred right after the upgrade, I assume this might be the reason?

    Am I doing something wrong here?

    """
    Traceback (most recent call last):
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/externals/loky/process_executor.py", line 436, in _process_worker
        r = call_item()
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/externals/loky/process_executor.py", line 288, in __call__
        return self.fn(*self.args, **self.kwargs)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/_parallel_backends.py", line 595, in __call__
        return self.func(*args, **kwargs)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/parallel.py", line 263, in __call__
        for func, args, kwargs in self.items]
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/parallel.py", line 263, in <listcomp>
        for func, args, kwargs in self.items]
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/lineartree/_classes.py", line 56, in __call__
        with config_context(**self.config):
      File "/Users/martin/opt/anaconda3/lib/python3.7/contextlib.py", line 239, in helper
        return _GeneratorContextManager(func, args, kwds)
      File "/Users/martin/opt/anaconda3/lib/python3.7/contextlib.py", line 82, in __init__
        self.gen = func(*args, **kwds)
    TypeError: config_context() got an unexpected keyword argument 'target_offload'
    """
    
    The above exception was the direct cause of the following exception:
    
    Traceback (most recent call last):
      File "compression_selection_pipeline.py", line 41, in <module>
        model_pipeline.learn_runtime_models(calibration_result_dir)
      File "/Users/martin/Programming/compression_selection_v3/hyrise_calibration/model_pipeline.py", line 670, in learn_runtime_models
        non_splitting_models("table_scan", table_scans)
      File "/Users/martin/Programming/compression_selection_v3/hyrise_calibration/model_pipeline.py", line 590, in non_splitting_models
        fitted_model = model_dict["model"].fit(X_train, y_train)
      File "/Users/martin/Programming/compression_selection_v3/hyrise_calibration/model_pipeline.py", line 209, in fit
        return self.regression.fit(X, y)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/lineartree/lineartree.py", line 187, in fit
        self._fit(X, y, sample_weight)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/lineartree/_classes.py", line 576, in _fit
        self._grow(X, y, sample_weight)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/lineartree/_classes.py", line 387, in _grow
        loss=loss)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/lineartree/_classes.py", line 285, in _split
        for feat in split_feat)
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/parallel.py", line 1056, in __call__
        self.retrieve()
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/parallel.py", line 935, in retrieve
        self._output.extend(job.get(timeout=self.timeout))
      File "/Users/martin/opt/anaconda3/lib/python3.7/site-packages/joblib/_parallel_backends.py", line 542, in wrap_future_result
        return future.result(timeout=timeout)
      File "/Users/martin/opt/anaconda3/lib/python3.7/concurrent/futures/_base.py", line 435, in result
        return self.__get_result()
      File "/Users/martin/opt/anaconda3/lib/python3.7/concurrent/futures/_base.py", line 384, in __get_result
        raise self._exception
    TypeError: config_context() got an unexpected keyword argument 'target_offload'
    

    PS: I have already left a star. :D

    opened by Bouncner 3
  • Option to specify features to use for splitting and for leaf models

    Option to specify features to use for splitting and for leaf models

    Added two additional parameters:

    • split_features: Indices of features that can be used for splitting. Default all.
    • linear_features: Indices of features that are used by the linear models in the leaves. Default all except for categorical features

    This implements a feature requested in https://github.com/cerlymarco/linear-tree/issues/2

    Potential performance improvement: Currently the code still computes bins for all features and not only for those used for splitting.

    opened by JonasRauch 3
  • Rationale for rounding during _parallel_binning_fit and _grow

    Rationale for rounding during _parallel_binning_fit and _grow

    I noticed that the implementations of _parallel_binning_fit and _grow internally round loss values to 5 decimal places. This makes the regression results dependent on the scale of the labels, as data with a lower natural loss value will result in many different splits of the data having the same loss when rounded to 5 decimal places. Is there a reason why this is the case?

    This behavior can be observed by fitting a LinearTreeRegressor using the default loss function and multiplying the scale of the labels by a small number (like 1e-9). This will result in the regressor no longer learning any splits.

    opened by session-id 2
  • ValueError: Invalid parameter linearforestregression for estimator Pipeline

    ValueError: Invalid parameter linearforestregression for estimator Pipeline

    Great work! I'm new to ML and stuck with this. I'm trying to combine pipeline and GridSearch to search for best possible hyperparameters for a model.

    image

    I got the following error:

    image

    Kindly help : )

    opened by NousMei 2
  • Performance and possibility to split only on subset of features

    Performance and possibility to split only on subset of features

    Hey, I have been playing around a lot with your linear trees. Like them very much. Thanks!

    Nevertheless, I am somewhat disappointed by the runtime performance. Compared to XGBoost Regressors (I know it's not a fair comparison) or linear regressions (also not fair), the linear tree is reeeeeaally slow. 50k observations, 80 features: 2s for linear regression, 27s for XGBoost, and 300s for the linear tree. Have you seen similar runtimes or might I be using it wrong?

    Another aspects that's interesting to me is the question whether is possibe to limit the features which are used for splits. I haven't found it in the code. Any change to see it in the future?

    opened by Bouncner 2
  • export to graphviz  -AttributeError: 'LinearTreeRegressor' object has no attribute 'n_features_'

    export to graphviz -AttributeError: 'LinearTreeRegressor' object has no attribute 'n_features_'

    Hi

    thanks for writing this great package!

    I was trying to display the decision tree with graphviz I get this error

    AttributeError: 'LinearTreeRegressor' object has no attribute 'n_features_'

    from lineartree import LinearTreeRegressor from sklearn.linear_model import LinearRegression

    reg = LinearTreeRegressor(base_estimator=LinearRegression()) reg.fit(train[x_cols], train["y"])

    from graphviz import Source from sklearn import tree

    graph = Source( tree.export_graphviz(reg, out_file=None,feature_names=train.columns))

    opened by ricmarchao 2
  • numpy deprecation warning

    numpy deprecation warning

    /lineartree/_classes.py:338: DeprecationWarning:

    the interpolation= argument to quantile was renamed to method=, which has additional options. Users of the modes 'nearest', 'lower', 'higher', or 'midpoint' are encouraged to review the method they. (Deprecated NumPy 1.22)

    Seems like a quick update here would get this warning to stop showing up, right? I can always ignore it, but figured I would mention it in case it is actually an error on my side.

    Also, sorry, I don't actually what the best open source etiquette is. If I'm supposed to create a pull request with a proposed fix instead of just mentioning it then feel free to correct me.

    opened by paul-brenner 1
  • How to gridsearch tree and regression parameters?

    How to gridsearch tree and regression parameters?

    Hi, I am wondering how to perform a GridsearchCV to find best parameters for the tree and regression model? For now I am able to tune the tree component of my model:

    `

     param_grid={
        'n_estimators': [50, 100, 500, 700],
        'max_depth': [10, 20, 30, 50],
        'min_samples_split' : [2, 4, 8, 16, 32],
        'max_features' : ['sqrt', 'log2', None]
    }
    cv = RepeatedKFold(n_repeats=3,
                       n_splits=3,
                       random_state=1)
    
    model = GridSearchCV(
        LinearForestRegressor(ElasticNet(random_state = 0), random_state=42),
        param_grid=param_grid,
        n_jobs=-1,
        cv=cv,
        scoring='neg_root_mean_squared_error'
        )
    

    `

    opened by zuzannakarwowska 1
  • Potential bug in LinearForestClassifier 'predict_proba'

    Potential bug in LinearForestClassifier 'predict_proba'

    Hello! Thank you for useful package!

    I think I might have found a potential bug in LinearForestClassifier.

    I expected 'predict_proba' to use 'self.decision_function', similarly to 'predict' - to include predictions from both estimators (base + forest). Is that a potential bug or am I in wrong here?

    https://github.com/cerlymarco/linear-tree/blob/8d5beca8d492cb8c57e6618e3fb770860f28b550/lineartree/lineartree.py#L1560

    opened by PiotrKaszuba 1
Releases(0.3.5)
Owner
Marco Cerliani
Statistician Hacker & Data Scientist
Marco Cerliani
Social Fabric: Tubelet Compositions for Video Relation Detection

Social-Fabric Social Fabric: Tubelet Compositions for Video Relation Detection This repository contains the code and results for the following paper:

Shuo Chen 7 Aug 09, 2022
SwinTrack: A Simple and Strong Baseline for Transformer Tracking

SwinTrack This is the official repo for SwinTrack. A Simple and Strong Baseline Prerequisites Environment conda (recommended) conda create -y -n SwinT

LitingLin 196 Jan 04, 2023
This repository contains the segmentation user interface from the OpenSurfaces project, extracted as a lightweight tool

OpenSurfaces Segmentation UI This repository contains the segmentation user interface from the OpenSurfaces project, extracted as a lightweight tool.

Sean Bell 66 Jul 11, 2022
clustering moroccan stocks time series data using k-means with dtw (dynamic time warping)

Moroccan Stocks Clustering Context Hey! we don't always have to forecast time series am I right ? We use k-means to cluster about 70 moroccan stock pr

Ayman Lafaz 7 Oct 18, 2022
A large-scale video dataset for the training and evaluation of 3D human pose estimation models

ASPset-510 (Australian Sports Pose Dataset) is a large-scale video dataset for the training and evaluation of 3D human pose estimation models. It contains 17 different amateur subjects performing 30

Aiden Nibali 25 Jun 20, 2021
Python code to generate art with Generative Adversarial Network

GAN_Canvas_Maker Generating Art using Generative Adversarial Network (GAN) Python code to generate art with Generative Adversarial Network: https://to

Jonny Banana 10 Aug 22, 2022
buildseg is a building extraction plugin of QGIS based on PaddlePaddle.

buildseg buildseg is a building extraction plugin of QGIS based on PaddlePaddle. TODO Extract building on 512x512 remote sensing images. Extract build

Yizhou Chen 11 Sep 26, 2022
[ICCV 2021] Relaxed Transformer Decoders for Direct Action Proposal Generation

RTD-Net (ICCV 2021) This repo holds the codes of paper: "Relaxed Transformer Decoders for Direct Action Proposal Generation", accepted in ICCV 2021. N

Multimedia Computing Group, Nanjing University 80 Nov 30, 2022
The code repository for "PyCIL: A Python Toolbox for Class-Incremental Learning" in PyTorch.

PyCIL: A Python Toolbox for Class-Incremental Learning Introduction • Methods Reproduced • Reproduced Results • How To Use • License • Acknowledgement

Fu-Yun Wang 258 Dec 31, 2022
Swin-Transformer is basically a hierarchical Transformer whose representation is computed with shifted windows.

Swin-Transformer Swin-Transformer is basically a hierarchical Transformer whose representation is computed with shifted windows. For more details, ple

旷视天元 MegEngine 9 Mar 14, 2022
A new play-and-plug method of controlling an existing generative model with conditioning attributes and their compositions.

Viz-It Data Visualizer Web-Application If I ask you where most of the data wrangler looses their time ? It is Data Overview and EDA. Presenting "Viz-I

NVIDIA Research Projects 66 Jan 01, 2023
[NIPS 2021] UOTA: Improving Self-supervised Learning with Automated Unsupervised Outlier Arbitration.

UOTA: Improving Self-supervised Learning with Automated Unsupervised Outlier Arbitration This repository is the official PyTorch implementation of UOT

6 Jun 29, 2022
Deep Learning for Time Series Forecasting.

nixtlats:Deep Learning for Time Series Forecasting [nikstla] (noun, nahuatl) Period of time. State-of-the-art time series forecasting for pytorch. Nix

Nixtla 5 Dec 06, 2022
An implementation of shampoo

shampoo.pytorch An implementation of shampoo, proposed in Shampoo : Preconditioned Stochastic Tensor Optimization by Vineet Gupta, Tomer Koren and Yor

Ryuichiro Hataya 69 Sep 10, 2022
Algo-burn - Script to configure an Algorand address as a "burn" address for one or more ASA tokens

Algorand Burn Address This is a simple script to illustrate how a "burn address"

GSD 5 May 10, 2022
PyTorch Implementation of Fully Convolutional Networks. (Training code to reproduce the original result is available.)

pytorch-fcn PyTorch implementation of Fully Convolutional Networks. Requirements pytorch = 0.2.0 torchvision = 0.1.8 fcn = 6.1.5 Pillow scipy tqdm

Kentaro Wada 1.6k Jan 07, 2023
Code release for NeX: Real-time View Synthesis with Neural Basis Expansion

NeX: Real-time View Synthesis with Neural Basis Expansion Project Page | Video | Paper | COLAB | Shiny Dataset We present NeX, a new approach to novel

536 Dec 20, 2022
PyTorch implementation of PP-LCNet

PP-LCNet-Pytorch Pre-Trained Models Google Drive p018 Accuracy Models Top1 Top5 PPLCNet_x0_25 0.5186 0.7565 PPLCNet_x0_35 0.5809 0.8083 PPLCNet_x0_5 0

24 Dec 12, 2022
ByteTrack超详细教程!训练自己的数据集&&摄像头实时检测跟踪

ByteTrack超详细教程!训练自己的数据集&&摄像头实时检测跟踪

Double-zh 45 Dec 19, 2022
This repository contains PyTorch code for Robust Vision Transformers.

This repository contains PyTorch code for Robust Vision Transformers.

117 Dec 07, 2022