Parse URLs for DOIs, PubMed identifiers, PMC identifiers, arXiv identifiers, etc.

Overview

citation-url

Tests Cookiecutter template from @cthoyt PyPI PyPI - Python Version PyPI - License Code style: black

Parse URLs for DOIs, PubMed identifiers, PMC identifiers, arXiv identifiers, etc.

This module has a single parse() function that takes in a URL and gives back a CURIE pair (with None as the first entry if it could not parse)

>> citation_url.parse("http://www.ncbi.nlm.nih.gov/pubmed/34739845") ('pubmed', '34739845') >>> citation_url.parse("https://example.com/true-garbage") (None, 'https://example.com/true-garbage')">
>>> import citation_url
>>> citation_url.parse("https://joss.theoj.org/papers/10.21105/joss.01708")
('doi', '10.21105/joss.01708')
>>> citation_url.parse("http://www.ncbi.nlm.nih.gov/pubmed/34739845")
('pubmed', '34739845')
>>> citation_url.parse("https://example.com/true-garbage")
(None, 'https://example.com/true-garbage')

🚀 Installation

The most recent release can be installed from PyPI with:

$ pip install citation_url

The most recent code and data can be installed directly from GitHub with:

$ pip install git+https://github.com/cthoyt/citation-url.git

👐 Contributing

Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See CONTRIBUTING.md for more information on getting involved.

👋 Attribution

⚖️ License

The code in this package is licensed under the MIT License.

🍪 Cookiecutter

This package was created with @audreyfeldroy's cookiecutter package using @cthoyt's cookiecutter-snekpack template.

🛠️ For Developers

See developer instrutions

The final section of the README is for if you want to get involved by making a code contribution.

Development Installation

To install in development mode, use the following:

$ git clone git+https://github.com/cthoyt/citation-url.git
$ cd citation-url
$ pip install -e .

🥼 Testing

After cloning the repository and installing tox with pip install tox, the unit tests in the tests/ folder can be run reproducibly with:

$ tox

Additionally, these tests are automatically re-run with each commit in a GitHub Action.

📖 Building the Documentation

$ tox -e docs

📦 Making a Release

After installing the package in development mode and installing tox with pip install tox, the commands for making a new release are contained within the finish environment in tox.ini. Run the following from the shell:

$ tox -e finish

This script does the following:

  1. Uses Bump2Version to switch the version number in the setup.cfg and src/citation_url/version.py to not have the -dev suffix
  2. Packages the code in both a tar archive and a wheel
  3. Uploads to PyPI using twine. Be sure to have a .pypirc file configured to avoid the need for manual input at this step
  4. Push to GitHub. You'll need to make a release going with the commit where the version was bumped.
  5. Bump the version to the next patch. If you made big changes and want to bump the version by minor, you can use tox -e bumpversion minor after.
You might also like...
MeSH2Matrix - A set of Python codes for the generation of biomedical ontologies from the MeSH keywords of the PubMed scholarly publications

A set of Python codes for the generation of biomedical ontologies from the MeSH keywords of the PubMed scholarly publications

Empirical Study of Transformers for Source Code & A Simple Approach for Handling Out-of-Vocabulary Identifiers in Deep Learning for Source Code

Transformers for variable misuse, function naming and code completion tasks The official PyTorch implementation of: Empirical Study of Transformers fo

Simple DDL Parser to parse SQL (HQL, TSQL, AWS Redshift, Snowflake and other dialects) ddl files to json/python dict with full information about columns: types, defaults, primary keys, etc.

Simple DDL Parser Build with ply (lex & yacc in python). A lot of samples in 'tests/. Is it Stable? Yes, library already has about 5000+ usage per day

Python based Web Scraper which can discover javascript files and parse them for juicy information (API keys, IP's, Hidden Paths etc)
Python based Web Scraper which can discover javascript files and parse them for juicy information (API keys, IP's, Hidden Paths etc)

Python based Web Scraper which can discover javascript files and parse them for juicy information (API keys, IP's, Hidden Paths etc).

🗃 Open source self-hosted web archiving. Takes URLs/browser history/bookmarks/Pocket/Pinboard/etc., saves HTML, JS, PDFs, media, and more...
🗃 Open source self-hosted web archiving. Takes URLs/browser history/bookmarks/Pocket/Pinboard/etc., saves HTML, JS, PDFs, media, and more...

ArchiveBox Open-source self-hosted web archiving. ▶️ Quickstart | Demo | Github | Documentation | Info & Motivation | Community | Roadmap "Your own pe

arxiv-sanity, but very lite, simply providing the core value proposition of the ability to tag arxiv papers of interest and have the program recommend similar papers.
arxiv-sanity, but very lite, simply providing the core value proposition of the ability to tag arxiv papers of interest and have the program recommend similar papers.

arxiv-sanity, but very lite, simply providing the core value proposition of the ability to tag arxiv papers of interest and have the program recommend similar papers.

Listing arxiv - Personalized list of today's articles from ArXiv
Listing arxiv - Personalized list of today's articles from ArXiv

Personalized list of today's articles from ArXiv Print and/or send to your gmail

Arxiv harvester - Poor man's simple harvester for arXiv resources

Poor man's simple harvester for arXiv resources This modest Python script takes

This tool extracts Credit card numbers, NTLM(DCE-RPC, HTTP, SQL, LDAP, etc), Kerberos (AS-REQ Pre-Auth etype 23), HTTP Basic, SNMP, POP, SMTP, FTP, IMAP, etc from a pcap file or from a live interface.

This tool extracts Credit card numbers, NTLM(DCE-RPC, HTTP, SQL, LDAP, etc), Kerberos (AS-REQ Pre-Auth etype 23), HTTP Basic, SNMP, POP, SMTP, FTP, IMAP, etc from a pcap file or from a live interface.

Parse feeds in Python

feedparser - Parse Atom and RSS feeds in Python. Copyright 2010-2020 Kurt McKee cont[email protected] Copyright 2002-2008 Mark Pilgrim feedparser

A python module to parse the Open Graph Protocol

OpenGraph is a module of python for parsing the Open Graph Protocol, you can read more about the specification at http://ogp.me/ Installation $ pip in

Parse human-readable date/time strings

parsedatetime Parse human-readable date/time strings. Python 2.6 or greater is required for parsedatetime version 1.0 or greater. While we still test

Parse 11.000 free proxies!

Proxy Machine Description I did this project in order to boost views with the teleboost ✈️ in my Telegram channel. You can use it not only for boostin

Parse Robinhood 1099 Tax Document from PDF into CSV
Parse Robinhood 1099 Tax Document from PDF into CSV

Robinhood 1099 Parser This project converts Robinhood Securities 1099 tax document from PDF to CSV file. This tool will be helpful for those who need

Release of SPLASH: Dataset for semantic parse correction with natural language feedback in the context of text-to-SQL parsing
Release of SPLASH: Dataset for semantic parse correction with natural language feedback in the context of text-to-SQL parsing

SPLASH: Semantic Parsing with Language Assistance from Humans SPLASH is dataset for the task of semantic parse correction with natural language feedba

Aggrokatz is an aggressor plugin extension for Cobalt Strike which enables pypykatz to interface with the beacons remotely and allows it to parse LSASS dump files and registry hive files to extract credentials and other secrets stored without downloading the file and without uploading any suspicious code to the beacon.
Using context-free grammar formalism to parse English sentences to determine their structure to help computer to better understand the meaning of the sentence.

Sentance Parser Executing the Program Make sure Python 3.6+ is installed. Install requirements $ pip install requirements.txt Run the program:

Releases(v0.1.0)
Owner
Charles Tapley Hoyt
Bio/cheminformatician, open scientist, maintainer of @pybel and @pykeen, part of @indralab (he/him)
Charles Tapley Hoyt
glip is a module for retrieve ip address like local-ip, global-ip, external-ip as string.

gle_ip_info glip is a module for retrieve ip address like local-ip, global-ip, external-ip as string.

Fatin Shadab 3 Nov 21, 2021
A simple and easy to use collection of random python functions.

A simple and easy to use collection of random python functions.

Diwan Mohamed Faheer 1 Nov 17, 2021
A simple toolchain for moving Remarkable highlights to Readwise

A simple toolchain for moving Remarkable highlights to Readwise

zach wick 20 Dec 20, 2022
Airspy-Utils is a small software collection to help with firmware related operations on Airspy HF+ devices.

Airspy-Utils Airspy-Utils is a small software collection to help with firmware related operations on Airspy HF+ devices on Linux (and other free syste

Dhiru Kholia 11 Oct 04, 2022
An extremely simple package with a single utillity class used for gracefully handling POSIX shutdown signals.

graceful-killer An extremely simple package with a single utillity class used for gracefully handling POSIX shutdown signals. Installation Use pip to

Sven Ćurković 1 Dec 09, 2021
Application for easy configuration of swap file and swappiness priority in slackware and others linux distributions.

Swap File Program created with the objective of assisting in the configuration of swap file in Distributions such as Slackware. Required packages: pyt

Mauricio Ferrari 3 Aug 06, 2022
EVE-NG tools, A Utility to make operations with EVE-NG more friendly.

EVE-NG tools, A Utility to make operations with EVE-NG more friendly. Also it support different snapshot operations with same style as Libvirt/KVM

Bassem Aly 8 Jan 05, 2023
Python Yeelight YLKG07YL/YLKG08YL dimmer handler

With this class you can receive, decrypt and handle Yeelight YLKG07YL/YLKG08YL dimmer bluetooth notifications in your python code.

12 Dec 26, 2022
Patch the pclntable from Go binaries

Pretrain and Fine-tune a T5 model with Flax on GCP This tutorial details how pretrain and fine-tune a FlaxT5 model from HuggingFace using a TPU VM ava

6 Oct 05, 2022
A small utility that sorts your files.

FileSorter A small utility that sorts your files. TODO: Scan directory to find files(thanks @corruptmemry for this!) Split extensions to determine fil

2 Jun 16, 2022
Compute the fair market value (FMV) of staking rewards at time of receipt.

tendermint-tax A tool to help calculate the tax liability of staking rewards on Tendermint chains. Specifically, this tool calculates the fair market

5 Jan 07, 2022
ecowater-softner is a Python library for collecting information from Ecowater water softeners.

Ecowater Softner ecowater-softner is a Python library for collecting information from Ecowater water softeners. Installation Use the package manager p

6 Dec 08, 2022
A library for interacting with Path of Exile game and economy data, and a unique loot filter generation framework.

wraeblast A library for interfacing with Path of Exile game and economy data, and a set of item filters geared towards trade league players. Filter Ge

David Gidwani 29 Aug 28, 2022
Analyze metadata of your Python project.

Analyze metadata of your Python projects Setup: Clone repo py-m venv venv (venv) pip install -r requirements.txt specify the folders which you want to

Pedro Monteiro de Carvalho e Silva Prado 1 Nov 10, 2021
A fast Python implementation of Ac Auto Mechine

A fast Python implementation of Ac Auto Mechine

Jin Zitian 1 Dec 07, 2021
腾讯云轻量服务流量超出限制自动关机

LightHouse_Automatic_Shutdown 腾讯云轻量服务流量超出限制自动关机

132 Dec 14, 2022
Software to help automate collecting crowdsourced annotations using Mechanical Turk.

Video Crowdsourcing Software to help automate collecting crowdsourced annotations using Mechanical Turk. The goal of this project is to enable crowdso

Mike Peven 1 Oct 25, 2021
Python USD rate in RUB parser

Python EUR and USD rate parser. Python USD and EUR rate in RUB parser. Parsing i

Andrew 2 Feb 17, 2022
Local backup made easy, with Python and shutil

KTBackup BETA Local backup made easy, with Python and shutil Features One-command backup and restore Minimalistic (only using stdlib) Convenient direc

kelptaken 1 Dec 27, 2021
Python script to launch burp scans automatically

SimpleAutoBurp Python script that takes a config.json file as config and uses Burp Suite Pro to scan a list of websites.

Adan Álvarez 26 Jul 18, 2022