Skoot is a lightweight python library of machine learning transformer classes that interact with scikit-learn and pandas.

Overview

codecov Supported versions Supported versions Supported versions CircleCI Build Status

skoot

Skoot is a lightweight python library of machine learning transformer classes that interact with scikit-learn and pandas. Its objective is to expedite data munging and pre-processing tasks that can tend to take up so much of data science practitioners' time. See the documentation for more info.

Note that skoot is the preferred alternative to the now deprecated skutil library

Two minutes to model-readiness

Real world data is nasty. Most data scientists spend the majority of their time tackling data cleansing tasks. With skoot, we can automate away so much of the bespoke hacking solutions that consume data scientists' time.

In this example, we'll examine a common dataset (the adult dataset from the UCI machine learning repo) that requires significant pre-processing.

from skoot.datasets import load_adult_df
from skoot.feature_selection import FeatureFilter
from skoot.decomposition import SelectivePCA
from skoot.preprocessing import DummyEncoder
from skoot.utils.dataframe import get_numeric_columns
from skoot.utils.dataframe import get_categorical_columns
from sklearn.model_selection import train_test_split
from sklearn.pipeline import Pipeline
from sklearn.ensemble import RandomForestClassifier
from sklearn.metrics import accuracy_score

# load the dataset with the skoot-native loader & split it
adult = load_adult_df(tgt_name="target")
y = adult.pop("target")
X_train, X_test, y_train, y_test = train_test_split(
    adult, y, random_state=42, test_size=0.2)
    
# get numeric and categorical feature names
num_cols = get_numeric_columns(X_train).columns
obj_cols = get_categorical_columns(X_train).columns

# remove the education-num from the num_cols since we're going to remove it
num_cols = num_cols[~(num_cols == "education-num")]
    
# build a pipeline
pipe = Pipeline([
    # drop out the ordinal level that's otherwise equal to "education"
    ("dropper", FeatureFilter(cols=["education-num"])),
    
    # decompose the numeric features with PCA
    ("pca", SelectivePCA(cols=num_cols)),
    
    # dummy encode the categorical features
    ("dummy", DummyEncoder(cols=obj_cols, handle_unknown="ignore")),
    
    # and a simple classifier class
    ("clf", RandomForestClassifier(n_estimators=100, random_state=42))
])

pipe.fit(X_train, y_train)

# produce predictions
preds = pipe.predict(X_test)
print("Test accuracy: %.3f" % accuracy_score(y_test, preds))

For more tutorials, check out the documentation.

Comments
  • Windows: pip install not working

    Windows: pip install not working

    Hi, I can't install skoot neither via pip, nor anaconda.

    > pip install skoot
    Collecting skoot
      Could not find a version that satisfies the requirement skoot (from versions: )
    No matching distribution found for skoot
    

    Any ideas why that might be? Thank you!

    opened by r0f1 2
  • Bump django from 1.11 to 1.11.29 in /build_tools/doc

    Bump django from 1.11 to 1.11.29 in /build_tools/doc

    Bumps django from 1.11 to 1.11.29.

    Commits
    • f1e3017 [1.11.x] Bumped version for 1.11.29 release.
    • 02d97f3 [1.11.x] Fixed CVE-2020-9402 -- Properly escaped tolerance parameter in GIS f...
    • e643833 [1.11.x] Pinned PyYAML < 5.3 in test requirements.
    • d0e3eb8 [1.11.x] Added CVE-2020-7471 to security archive.
    • 9a62ed5 [1.11.x] Post-release version bump.
    • e09f09b [1.11.x] Bumped version for 1.11.28 release.
    • 001b063 [1.11.x] Fixed CVE-2020-7471 -- Properly escaped StringAgg(delimiter) parameter.
    • 7fd1ca3 [1.11.x] Fixed timezones tests for PyYAML 5.3+.
    • 121115d [1.11.x] Added CVE-2019-19844 to the security archive.
    • 2c4fb9a [1.11.x] Post-release version bump.
    • Additional commits viewable in compare view

    Dependabot compatibility score

    Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


    Dependabot commands and options

    You can trigger Dependabot actions by commenting on this PR:

    • @dependabot rebase will rebase this PR
    • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
    • @dependabot merge will merge this PR after your CI passes on it
    • @dependabot squash and merge will squash and merge this PR after your CI passes on it
    • @dependabot cancel merge will cancel a previously requested merge and block automerging
    • @dependabot reopen will reopen this PR if it is closed
    • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
    • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
    • @dependabot use these labels will set the current labels as the default for future PRs for this repo and language
    • @dependabot use these reviewers will set the current reviewers as the default for future PRs for this repo and language
    • @dependabot use these assignees will set the current assignees as the default for future PRs for this repo and language
    • @dependabot use this milestone will set the current milestone as the default for future PRs for this repo and language

    You can disable automated security fix PRs for this repo from the Security Alerts page.

    dependencies 
    opened by dependabot[bot] 1
  • Bump django from 1.11 to 1.11.28 in /build_tools/doc

    Bump django from 1.11 to 1.11.28 in /build_tools/doc

    Bumps django from 1.11 to 1.11.28.

    Commits
    • e09f09b [1.11.x] Bumped version for 1.11.28 release.
    • 001b063 [1.11.x] Fixed CVE-2020-7471 -- Properly escaped StringAgg(delimiter) parameter.
    • 7fd1ca3 [1.11.x] Fixed timezones tests for PyYAML 5.3+.
    • 121115d [1.11.x] Added CVE-2019-19844 to the security archive.
    • 2c4fb9a [1.11.x] Post-release version bump.
    • 358973a [1.11.x] Bumped version for 1.11.27 release.
    • f4cff43 [1.11.x] Fixed CVE-2019-19844 -- Used verified user email for password reset ...
    • a235574 [1.11.x] Refs #31073 -- Added release notes for 02eff7ef60466da108b1a33f1e4dc...
    • e8fdf00 [1.11.x] Fixed #31073 -- Prevented CheckboxInput.get_context() from mutating ...
    • 4f15016 [1.11.x] Post-release version bump.
    • Additional commits viewable in compare view

    Dependabot compatibility score

    Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


    Dependabot commands and options

    You can trigger Dependabot actions by commenting on this PR:

    • @dependabot rebase will rebase this PR
    • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
    • @dependabot merge will merge this PR after your CI passes on it
    • @dependabot squash and merge will squash and merge this PR after your CI passes on it
    • @dependabot cancel merge will cancel a previously requested merge and block automerging
    • @dependabot reopen will reopen this PR if it is closed
    • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
    • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
    • @dependabot use these labels will set the current labels as the default for future PRs for this repo and language
    • @dependabot use these reviewers will set the current reviewers as the default for future PRs for this repo and language
    • @dependabot use these assignees will set the current assignees as the default for future PRs for this repo and language
    • @dependabot use this milestone will set the current milestone as the default for future PRs for this repo and language

    You can disable automated security fix PRs for this repo from the Security Alerts page.

    dependencies 
    opened by dependabot[bot] 1
  • Bump django from 1.11 to 1.11.23 in /build_tools/doc

    Bump django from 1.11 to 1.11.23 in /build_tools/doc

    Bumps django from 1.11 to 1.11.23.

    Commits
    • 9748977 [1.11.x] Bumped version for 1.11.23 release.
    • 869b34e [1.11.x] Fixed CVE-2019-14235 -- Fixed potential memory exhaustion in django....
    • ed682a2 [1.11.x] Fixed CVE-2019-14234 -- Protected JSONField/HStoreField key and inde...
    • 52479ac [1.11.x] Fixed CVE-2019-14233 -- Prevented excessive HTMLParser recursion in ...
    • 42a66e9 [1.11.X] Fixed CVE-2019-14232 -- Adjusted regex to avoid backtracking issues ...
    • 693046e [1.11.x] Added stub release notes for security releases.
    • 6d054b5 [1.11.x] Added CVE-2019-12781 to the security release archive.
    • 7c849b9 [1.11.x] Post-release version bump.
    • 480380c [1.11.x] Bumped version for 1.11.22 release.
    • 32124fc [1.11.x] Fixed CVE-2019-12781 -- Made HttpRequest always trust SECURE_PROXY_S...
    • Additional commits viewable in compare view

    Dependabot compatibility score

    Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


    Dependabot commands and options

    You can trigger Dependabot actions by commenting on this PR:

    • @dependabot rebase will rebase this PR
    • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
    • @dependabot merge will merge this PR after your CI passes on it
    • @dependabot squash and merge will squash and merge this PR after your CI passes on it
    • @dependabot cancel merge will cancel a previously requested merge and block automerging
    • @dependabot reopen will reopen this PR if it is closed
    • @dependabot ignore this [patch|minor|major] version will close this PR and stop Dependabot creating any more for this minor/major version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
    • @dependabot use these labels will set the current labels as the default for future PRs for this repo and language
    • @dependabot use these reviewers will set the current reviewers as the default for future PRs for this repo and language
    • @dependabot use these assignees will set the current assignees as the default for future PRs for this repo and language
    • @dependabot use this milestone will set the current milestone as the default for future PRs for this repo and language

    You can disable automated security fix PRs for this repo from the Security Alerts page.

    dependencies 
    opened by dependabot[bot] 1
  • Wrapped classes still reference sklearn user-guide

    Wrapped classes still reference sklearn user-guide

    The "See Also" section of wrapped sklearn estimators still references sklearn user_guide refs. We need to monkey patch "Selective" (or whatever prefix we are using) in front of them so they link in our documentation.

    bug 
    opened by tgsmith61591 1
  • Bump django from 1.11 to 2.2.24 in /build_tools/doc

    Bump django from 1.11 to 2.2.24 in /build_tools/doc

    Bumps django from 1.11 to 2.2.24.

    Commits
    • 2da029d [2.2.x] Bumped version for 2.2.24 release.
    • f27c38a [2.2.x] Fixed CVE-2021-33571 -- Prevented leading zeros in IPv4 addresses.
    • 053cc95 [2.2.x] Fixed CVE-2021-33203 -- Fixed potential path-traversal via admindocs'...
    • 6229d87 [2.2.x] Confirmed release date for Django 2.2.24.
    • f163ad5 [2.2.x] Added stub release notes and date for Django 2.2.24.
    • bed1755 [2.2.x] Changed IRC references to Libera.Chat.
    • 63f0d7a [2.2.x] Refs #32718 -- Fixed file_storage.test_generate_filename and model_fi...
    • 5fe4970 [2.2.x] Post-release version bump.
    • 61f814f [2.2.x] Bumped version for 2.2.23 release.
    • b8ecb06 [2.2.x] Fixed #32718 -- Relaxed file name validation in FileField.
    • Additional commits viewable in compare view

    Dependabot compatibility score

    Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


    Dependabot commands and options

    You can trigger Dependabot actions by commenting on this PR:

    • @dependabot rebase will rebase this PR
    • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
    • @dependabot merge will merge this PR after your CI passes on it
    • @dependabot squash and merge will squash and merge this PR after your CI passes on it
    • @dependabot cancel merge will cancel a previously requested merge and block automerging
    • @dependabot reopen will reopen this PR if it is closed
    • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
    • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
    • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
    • @dependabot use these labels will set the current labels as the default for future PRs for this repo and language
    • @dependabot use these reviewers will set the current reviewers as the default for future PRs for this repo and language
    • @dependabot use these assignees will set the current assignees as the default for future PRs for this repo and language
    • @dependabot use this milestone will set the current milestone as the default for future PRs for this repo and language

    You can disable automated security fix PRs for this repo from the Security Alerts page.

    dependencies 
    opened by dependabot[bot] 0
  • scipy._lib_version not found when building package

    scipy._lib_version not found when building package

    problem: error saying scipy._lib_version is missing when building skoot

    cause: scipy._lib_version was removed in scipy 1.5.0 --> https://github.com/scipy/scipy/pull/11290 (downgrading to scipy 1.4.0 helps)

    Thanks!

    opened by AgroSimi 0
  • pip install Skoot on Mac keeps failing with ERROR: Could not find a version that satisfies the requirement skoot (from versions: none).

    pip install Skoot on Mac keeps failing with ERROR: Could not find a version that satisfies the requirement skoot (from versions: none).

    Description

    pip install Skoot on Mac keeps failing with ERROR: Could not find a version that satisfies the requirement skoot (from versions: none) ERROR: No matching distribution found for skoot

    Steps/Code to Reproduce

    pip install skoot using python version : Python 2.7.17 using pip version : pip 19.3.1

    Expected Results

    No errors thrown, successful installation of Skoot

    Actual Results

    ERROR: Could not find a version that satisfies the requirement skoot (from versions: none) ERROR: No matching distribution found for skoot

    Versions

    platform - Darwin-19.2.0-x86_64-i386-64bit sys - ('Python', '2.7.17 (default, Oct 24 2019, 12:57:47) \n[GCC 4.2.1 Compatible Apple LLVM 11.0.0 (clang-1100.0.33.8)]') Skoot -( not able to install ) numpy -("NumPy", numpy.version) scipy - ('SciPy', '1.2.3') sklearn - scikit-learn->sklearn (1.16.6)

    opened by lakshmikrish-97 8
  • [MRG] Mac builds

    [MRG] Mac builds

    This PR adds builds for mac. Currently, it does not deploy to PyPI. We still need the deploy-vars group on ADO. Since we decided to just do mac + Linux for now, this branched off of add-azure... We can use that branch to play around with Windows, or create a new one

    opened by aaronreidsmith 1
  • Package Roadmap

    Package Roadmap

    Is skoot still an active project? Or is there a successor to this concept? Looking to build something similar for my specific workflow, but maybe it would be mutually beneficial to contribute to this project.

    opened by MattConflitti 2
  • String fields with typos

    String fields with typos

    Description

    TODO: Create a transformer that can map values in text fields to known "good" values given Levenstein distance or some other method.

    enhancement 
    opened by tgsmith61591 0
Releases(0.20.0)
Owner
Taylor G Smith
Data scientist, ML engineer and all-around hacker. Java was once my first love, but I've long since converted to the cult of Python.
Taylor G Smith
Automated Machine Learning with scikit-learn

auto-sklearn auto-sklearn is an automated machine learning toolkit and a drop-in replacement for a scikit-learn estimator. Find the documentation here

AutoML-Freiburg-Hannover 6.7k Jan 07, 2023
Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet.

Horovod Horovod is a distributed deep learning training framework for TensorFlow, Keras, PyTorch, and Apache MXNet. The goal of Horovod is to make dis

Horovod 12.9k Jan 07, 2023
(3D): LeGO-LOAM, LIO-SAM, and LVI-SAM installation and application

SLAM-application: installation and test (3D): LeGO-LOAM, LIO-SAM, and LVI-SAM Tested on Quadruped robot in Gazebo ● Results: video, video2 Requirement

EungChang-Mason-Lee 203 Dec 26, 2022
Primitives for machine learning and data science.

An Open Source Project from the Data to AI Lab, at MIT MLPrimitives Pipelines and primitives for machine learning and data science. Documentation: htt

MLBazaar 65 Dec 29, 2022
Open-Source CI/CD platform for ML teams. Deliver ML products, better & faster. βš‘οΈπŸ§‘β€πŸ”§

Deliver ML products, better & faster Giskard is an Open-Source CI/CD platform for ML teams. Inspect ML models visually from your Python notebook πŸ“— Re

Giskard 335 Jan 04, 2023
SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and TensorFlow

SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and TensorFlow, in High Performance Computing (HPC) simulations and workloads.

ml4ir: Machine Learning for Information Retrieval

ml4ir: Machine Learning for Information Retrieval | changelog Quickstart β†’ ml4ir Read the Docs | ml4ir pypi | python ReadMe ml4ir is an open source li

Salesforce 77 Jan 06, 2023
Decentralized deep learning in PyTorch. Built to train models on thousands of volunteers across the world.

Hivemind: decentralized deep learning in PyTorch Hivemind is a PyTorch library to train large neural networks across the Internet. Its intended usage

1.3k Jan 08, 2023
ETNA – time series forecasting framework

ETNA Time Series Library Predict your time series the easiest way Homepage | Documentation | Tutorials | Contribution Guide | Release Notes ETNA is an

Tinkoff.AI 675 Jan 08, 2023
Class-imbalanced / Long-tailed ensemble learning in Python. Modular, flexible, and extensible

IMBENS: Class-imbalanced Ensemble Learning in Python Language: English | Chinese/δΈ­ζ–‡ Links: Documentation | Gallery | PyPI | Changelog | Source | Downl

Zhining Liu 176 Jan 04, 2023
Time series changepoint detection

changepy Changepoint detection in time series in pure python Install pip install changepy Examples from changepy import pelt from cha

Rui Gil 92 Nov 08, 2022
nn-Meter is a novel and efficient system to accurately predict the inference latency of DNN models on diverse edge devices

A DNN inference latency prediction toolkit for accurately modeling and predicting the latency on diverse edge devices.

Microsoft 241 Dec 26, 2022
NCVX (NonConVeX): A User-Friendly and Scalable Package for Nonconvex Optimization in Machine Learning.

NCVX (NonConVeX): A User-Friendly and Scalable Package for Nonconvex Optimization in Machine Learning.

SUN Group @ UMN 28 Aug 03, 2022
A toolbox to iNNvestigate neural networks' predictions!

iNNvestigate neural networks! Table of contents Introduction Installation Usage and Examples More documentation Contributing Releases Introduction In

Maximilian Alber 1.1k Jan 05, 2023
MLFlow in a Dockercontainer based on Azurite and Postgres

mlflow-azurite-postgres docker This is a MLFLow image which works with a postgres DB and a local Azure Blob Storage Instance (Azurite). This image is

2 May 29, 2022
Databricks Certified Associate Spark Developer preparation toolkit to setup single node Standalone Spark Cluster along with material in the form of Jupyter Notebooks.

Databricks Certification Spark Databricks Certified Associate Spark Developer preparation toolkit to setup single node Standalone Spark Cluster along

19 Dec 13, 2022
Python factor analysis library (PCA, CA, MCA, MFA, FAMD)

Prince is a library for doing factor analysis. This includes a variety of methods including principal component analysis (PCA) and correspondence anal

Max Halford 915 Dec 31, 2022
healthy and lesion models for learning based on the joint estimation of stochasticity and volatility

health-lesion-stovol healthy and lesion models for learning based on the joint estimation of stochasticity and volatility Reference please cite this p

5 Nov 01, 2022
scikit-learn models hyperparameters tuning and feature selection, using evolutionary algorithms.

Sklearn-genetic-opt scikit-learn models hyperparameters tuning and feature selection, using evolutionary algorithms. This is meant to be an alternativ

Rodrigo Arenas 180 Dec 20, 2022
Machine Learning for RC Cars

Suiron Machine Learning for RC Cars Prediction visualization (green = actual, blue = prediction) Click the video below to see it in action! Dependenci

Kendrick Tan 706 Jan 02, 2023