One Stop Anomaly Shop: Anomaly detection using two-phase approach: (a) pre-labeling using statistics, Natural Language Processing and static rules; (b) anomaly scoring using supervised and unsupervised machine learning.

Related tags

Text Data & NLPOSAS
Overview

One Stop Anomaly Shop (OSAS)

Quick start guide

Step 1: Get/build the docker image

Option 1: Use precompiled image (might not reflect latest changes):

docker pull tiberiu44/osas:latest
docker image tag tiberiu44/osas:latest osas:latest

Option 2: Build the image locally

git clone https://github.com/adobe/OSAS.git
cd OSAS
docker build . -f docker/osas-elastic/Dockerfile -t osas:latest

Step 2: After building the docker image you can start OSAS by typing:

docker run -p 8888:8888/tcp -p 5601:5601/tcp -v <ABSOLUTE PATH TO DATA FOLDER>:/app osas

IMPORTANT NOTE: Please modify the above command by adding the absolute path to your datafolder in the appropiate location

After OSAS has started (it might take 1-2 minutes) you can use your browser to access some standard endpoints:

For Debug (in case you need to):

docker run -p 8888:8888/tcp -p 5601:5601/tcp -v <ABSOLUTE PATH TO DATA FOLDER>:/app -ti osas /bin/bash

Building the test pipeline

This guide will take you through all the necessary steps to configure, train and run your own pipeline on your own dataset.

Prerequisite: Add you own CSV dataset into your data-folder (the one provided in the docker run command)

Once you started your docker image, use the OSAS console to gain CLI access to all the tools.

In what follows, we assume that your dataset is called dataset.csv. Please update the commands as necessary in case you use a different name/location.

Be sure you are running scripts in the root folder of OSAS:

cd /osas

Step 1: Build a custom pipeline configuration file - this can be done fully manually on by bootstraping using our conf autogenerator script:

python3 osas/main/autoconfig.py --input-file=/app/dataset.csv --output-file=/app/dataset.conf

The above command will generate a custom configuration file for your dataset. It will try guess field types and optimal combinations between fields. You can edit the generated file (which should be available in the shared data-folder), using your favourite editor.

Standard templates for label generator types are:

[LG_MULTINOMIAL]
generator_type = MultinomialField
field_name = <FIELD_NAME>
absolute_threshold = 10
relative_threshold = 0.1

[LG_TEXT]
generator_type = TextField
field_name = <FIELD_NAME>
lm_mode = char
ngram_range = (3, 5)

[LG_NUMERIC]
generator_type = NumericField
field_name = <FIELD_NAME>

[LG_MUTLINOMIAL_COMBINER]
generator_type = MultinomialFieldCombiner
field_names = ['<FIELD_1>', '<FIELD_2>', ...]
absolute_threshold = 10
relative_threshold = 0.1

[LG_KEYWORD]
generator_type = KeywordBased
field_name = <FIELD_NAME>
keyword_list = ['<KEYWORD_1>', '<KEYWORD_2>', '<KEYWORD_3>', ...]

[LG_REGEX]
generator_type = KnowledgeBased
field_name = <FIELD_NAME>
rules_and_labels_tuple_list = [('<REGEX_1>','<LABEL_1>'), ('<REGEX_2>','<LABEL_2>'), ...]

You can use the above templates to add as many label generators you want. Just make sure that the header IDs are unique in the configuration file.

Step 2: Train the pipeline

python3 osas/main/train_pipeline --conf-file=/app/dataset.conf --input-file=/app/dataset.csv --model-file=/app/dataset.json

The above command will generate a pretrained pipeline using the previously created configuration file and the dataset

Step 3: Run the pipeline on a dataset

python3 osas/main/run_pipeline --conf-file=/app/dataset.conf --model-file=/app/dataset.json --input-file=/app/dataset.csv --output-file=/app/dataset-out.csv

The above command will run the pretrained pipeline on any compatible dataset. In the example we run the pipeline on the training data, but you can use previously unseen data. It will generate an output file with labels and anomaly scores and it will also import your data into Elasticsearch/Kibana. To view the result just use the the web interface.

Pipeline explained

The pipeline sequentially applies all label generators on the raw data, collects the labels and uses an anomaly scoring algorithm to generate anomaly scores. There are two main component classes: LabelGenerator and ScoringAlgorithm.

Label generators

NumericField

  • This type of LabelGenerator handles numerical fields. It computes the mean and standard deviation and generates labels according to the distance between the current value and the mean value (value<=sigma NORMAL, sigma<value<=2sigma BORDERLINE, 2sigma<value OUTLIER)

Params:

  • field_name: what field to look for in the data object

TextField

  • This type of LabelGenerator handles text fields. It builds a n-gram based language model and computes the perplexity of newly observed data. It also holds statistics over the training data (mean and stdev). (perplexity<=sigma NORMAL, sigma<preplexity<=2sigma BORDERLINE, 2perplexity<value OUTLIER)

Params:

  • field_name: What field to look for
  • lm_mode: Type of LM to build: char or token
  • ngram_range: N-gram range to use for computation

MultinomialField

  • This type of LabelGenerator handles fields with discreet value sets. It computes the probability of seeing a specific value and alerts based on relative and absolute thresholds.

Params

  • field_name: What field to use
  • absolute_threshold: Minimum absolute value for occurrences to trigger alert for
  • relative_threshold: Minimum relative value for occurrences to trigger alert for

MultinomialFieldCombiner

  • This type of LabelGenerator handles fields with discreet value sets and build advanced features by combining values across the same dataset entry. It computes the probability of seeing a specific value and alerts based on relative and absolute thresholds.

Params

  • field_names: What fields to combine
  • absolute_threshold: Minimum absolute value for occurrences to trigger alert for
  • relative_threshold: Minimum relative value for occurrences to trigger alert for

KeywordBased

  • This is a rule-based label generators. It applies a simple tokenization procedure on input text, by dropping special characters and numbers and splitting on white-space. It then looks for a specific set of keywords and generates labels accordingly

Params:

  • field_name: What field to use
  • keyword_list: The list of keywords to look for

OSAS has four unsupervised anomaly detection algorithms:

  • IFAnomaly: n-hot encoding, singular value decomposition, isolation forest (IF)

  • LOFAnomaly: n-hot encoding, singular value decomposition, local outlier factor (LOF)

  • SVDAnomaly: n-hot encoding, singular value decomposition, inverted transform, input reconstruction error

  • StatisticalNGramAnomaly: compute label n-gram probabilities, compute anomaly score as a sum of negative log likelihood

Owner
Adobe, Inc.
Open source from Adobe
Adobe, Inc.
Extract rooms type, door, neibour rooms, rooms corners nad bounding boxes, and generate graph from rplan dataset

Housegan-data-reader House-GAN++ (data-reader) Code and instructions for converting rplan dataset (raster images) to housegan++ data format. House-GAN

Sepid Hosseini 13 Nov 24, 2022
Toy example of an applied ML pipeline for me to experiment with MLOps tools.

Toy Machine Learning Pipeline Table of Contents About Getting Started ML task description and evaluation procedure Dataset description Repository stru

Shreya Shankar 190 Dec 21, 2022
New Modeling The Background CodeBase

Modeling the Background for Incremental Learning in Semantic Segmentation This is the updated official PyTorch implementation of our work: "Modeling t

Fabio Cermelli 9 Dec 28, 2022
Official codebase for Can Wikipedia Help Offline Reinforcement Learning?

Official codebase for Can Wikipedia Help Offline Reinforcement Learning?

Machel Reid 82 Dec 19, 2022
Predict an emoji that is associated with a text

Sentiment Analysis Sentiment analysis in computational linguistics is a general term for techniques that quantify sentiment or mood in a text. Can you

Tetsumichi(Telly) Umada 30 Sep 07, 2022
An extensive UI tool built using new data scraped from BBC News

BBC-News-Analyzer An extensive UI tool built using new data scraped from BBC New

Antoreep Jana 1 Dec 31, 2021
Correctly generate plurals, ordinals, indefinite articles; convert numbers to words

NAME inflect.py - Correctly generate plurals, singular nouns, ordinals, indefinite articles; convert numbers to words. SYNOPSIS import inflect p = in

Jason R. Coombs 762 Dec 29, 2022
Official implementations for various pre-training models of ERNIE-family, covering topics of Language Understanding & Generation, Multimodal Understanding & Generation, and beyond.

English|简体中文 ERNIE是百度开创性提出的基于知识增强的持续学习语义理解框架,该框架将大数据预训练与多源丰富知识相结合,通过持续学习技术,不断吸收海量文本数据中词汇、结构、语义等方面的知识,实现模型效果不断进化。ERNIE在累积 40 余个典型 NLP 任务取得 SOTA 效果,并在 G

5.4k Jan 03, 2023
Question and answer retrieval in Turkish with BERT

trfaq Google supported this work by providing Google Cloud credit. Thank you Google for supporting the open source! 🎉 What is this? At this repo, I'm

M. Yusuf Sarıgöz 13 Oct 10, 2022
PyTorch source code of NAACL 2019 paper "An Embarrassingly Simple Approach for Transfer Learning from Pretrained Language Models"

This repository contains source code for NAACL 2019 paper "An Embarrassingly Simple Approach for Transfer Learning from Pretrained Language Models" (P

Alexandra Chronopoulou 89 Aug 12, 2022
The code for two papers: Feedback Transformer and Expire-Span.

transformer-sequential This repo contains the code for two papers: Feedback Transformer Expire-Span The training code is structured for long sequentia

Meta Research 125 Dec 25, 2022
SIGIR'22 paper: Axiomatically Regularized Pre-training for Ad hoc Search

Introduction This codebase contains source-code of the Python-based implementation (ARES) of our SIGIR 2022 paper. Chen, Jia, et al. "Axiomatically Re

Jia Chen 17 Nov 09, 2022
🤕 spelling exceptions builder for lazy people

🤕 spelling exceptions builder for lazy people

Vlad Bokov 3 May 12, 2022
SNCSE: Contrastive Learning for Unsupervised Sentence Embedding with Soft Negative Samples

SNCSE SNCSE: Contrastive Learning for Unsupervised Sentence Embedding with Soft Negative Samples This is the repository for SNCSE. SNCSE aims to allev

Sense-GVT 59 Jan 02, 2023
Scikit-learn style model finetuning for NLP

Scikit-learn style model finetuning for NLP Finetune is a library that allows users to leverage state-of-the-art pretrained NLP models for a wide vari

indico 665 Dec 17, 2022
Research Code for NeurIPS 2020 Spotlight paper "Large-Scale Adversarial Training for Vision-and-Language Representation Learning": UNITER adversarial training part

VILLA: Vision-and-Language Adversarial Training This is the official repository of VILLA (NeurIPS 2020 Spotlight). This repository currently supports

Zhe Gan 109 Dec 31, 2022
Baseline code for Korean open domain question answering(ODQA)

Open-Domain Question Answering(ODQA)는 다양한 주제에 대한 문서 집합으로부터 자연어 질의에 대한 답변을 찾아오는 task입니다. 이때 사용자 질의에 답변하기 위해 주어지는 지문이 따로 존재하지 않습니다. 따라서 사전에 구축되어있는 Knowl

VUMBLEB 69 Nov 04, 2022
Data preprocessing rosetta parser for python

datapreprocessing_rosetta_parser I've never done any NLP or text data processing before, so I wanted to use this hackathon as a learning opportunity,

ASReview hackathon for Follow the Money 2 Nov 28, 2021
基于百度的语音识别,用python实现,pyaudio+pyqt

Speech-recognition 基于百度的语音识别,python3.8(conda)+pyaudio+pyqt+baidu-aip 百度有面向python

J-L 1 Jan 03, 2022
小布助手对话短文本语义匹配的一个baseline

oppo-text-match 小布助手对话短文本语义匹配的一个baseline 模型 参考:https://kexue.fm/archives/8213 base版本线下大概0.952,线上0.866(单模型,没做K-flod融合)。 训练 测试环境:tensorflow 1.15 + keras

苏剑林(Jianlin Su) 132 Dec 14, 2022