Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Related tags

Algorithmsssa
Overview

SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

  • python >=3.7
  • numpy
  • pandas
  • matplotlib
  • pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f 

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3

Owner
Anoop Lab
The major focus of our research group the study of early events using computational chemistry, and developing methods for this study.
Anoop Lab
A Python Package for Portfolio Optimization using the Critical Line Algorithm

A Python Package for Portfolio Optimization using the Critical Line Algorithm

19 Oct 11, 2022
CLI Eight Puzzle mini-game featuring BFS, DFS, Greedy and A* searches as solver algorithms.

🕹 Eight Puzzle CLI Jogo do quebra-cabeças de 8 peças em linha de comando desenvolvido para a disciplina de Inteligência Artificial. Escrito em python

Lucas Nakahara 1 Jun 30, 2021
PickMush - A mini study/project on boosting algorithm

PickMush A mini project implementing Boosting Author Shashwat Vaibhav What does it do? Classifies whether Mushroom is edible or is non-edible (binary

Shashwat Vaibahav 3 Nov 08, 2022
Official implementation of "Path Planning using Neural A* Search" (ICML-21)

Path Planning using Neural A* Search (ICML 2021) This is a repository for the following paper: Ryo Yonetani*, Tatsunori Taniai*, Mohammadamin Barekata

OMRON SINIC X 82 Jan 07, 2023
A command line tool for memorizing algorithms in Python by typing them.

Algo Drills A command line tool for memorizing algorithms in Python by typing them. In alpha and things will change. How it works Type out an algorith

Travis Jungroth 43 Dec 02, 2022
Pathfinding visualizer in pygame: A*

Pathfinding Visualizer A* What is this A* algorithm ? Simply put, it is an algorithm that aims to find the shortest possible path between two location

0 Feb 26, 2022
Given a list of tickers, this algorithm generates a recommended portfolio for high-risk investors.

RiskyPortfolioGenerator Given a list of tickers, this algorithm generates a recommended portfolio for high-risk investors. Working in a group, we crea

Victoria Zhao 2 Jan 13, 2022
Rover. Finding the shortest pass by Dijkstra’s shortest path algorithm

rover Rover. Finding the shortest path by Dijkstra’s shortest path algorithm Задача Вы — инженер, проектирующий роверы-беспилотники. Вам надо спроекти

1 Nov 11, 2021
A simple python application to visualize sorting algorithms.

Visualize sorting algorithms A simple python application to visualize sorting algorithms. Sort Algorithms Name Function Name O( ) Bubble Sort bubble_s

Duc Tran 3 Apr 01, 2022
Algorithmic virtual trading using the neostox platform

Documentation Neostox doesnt have an API Support, so this is a little selenium code to automate strategies How to use Clone this repository and then m

Abhishek Mittal 3 Jul 20, 2022
Exact algorithm for computing two-sided statistical tolerance intervals under a normal distribution assumption using Python.

norm-tol-int Exact algorithm for computing two-sided statistical tolerance intervals under a normal distribution assumption using Python. Methods The

Jed Ludlow 1 Jan 06, 2022
Minimal pure Python library for working with little-endian list representation of bit strings.

bitlist Minimal Python library for working with bit vectors natively. Purpose This library allows programmers to work with a native representation of

Andrei Lapets 0 Jul 25, 2022
ROS Basics and TurtleSim

Homework 1: Turtle Control Package Anna Garverick This package draws given waypoints, then waits for a service call with a start position to send the

Anna Garverick 1 Nov 22, 2021
iAWE is a wonderful dataset for those of us who work on Non-Intrusive Load Monitoring (NILM) algorithms.

iAWE is a wonderful dataset for those of us who work on Non-Intrusive Load Monitoring (NILM) algorithms. You can find its main page and description via this link. If you are familiar with NILM-TK API

Mozaffar Etezadifar 3 Mar 19, 2022
Genetic algorithm which evolves aoe2 DE ai scripts

AlphaScripter Use the power of genetic algorithms to evolve AI scripts for Age of Empires II : Definitive Edition. For now this package runs in AOC Us

6 Nov 04, 2022
Python implementation of Aho-Corasick algorithm for string searching

Python implementation of Aho-Corasick algorithm for string searching

Daniel O'Sullivan 1 Dec 31, 2021
Python Package for Reflection Ultrasound Computed Tomography (RUCT) Delay And Sum (DAS) Algorithm

pyruct Python Package for Reflection Ultrasound Computed Tomography (RUCT) Delay And Sum (DAS) Algorithm The imaging setup is explained in these paper

Berkan Lafci 21 Dec 12, 2022
This python algorithm creates a simple house floor plan based on a user-provided CSV file.

This python algorithm creates a simple house floor plan based on a user-provided CSV file. The algorithm generates possible router placements and evaluates where a signal will be reached in every roo

Joshua Miller 1 Nov 12, 2021
A genetic algorithm written in Python for educational purposes.

Genea: A Genetic Algorithm in Python Genea is a Genetic Algorithm written in Python, for educational purposes. I started writing it for fun, while lea

Dom De Felice 20 Jul 06, 2022