Some useful extensions for Matplotlib.

Overview

mplx

Some useful extensions for Matplotlib.

PyPi Version PyPI pyversions GitHub stars Downloads

gh-actions codecov LGTM Code style: black

Contour plots for functions with discontinuities

plt.contour mplx.contour(max_jump=1.0)

Matplotlib has problems with contour plots of functions that have discontinuities. The software has no way to tell discontinuities and very sharp, but continuous cliffs apart, and contour lines will be drawn along the discontinuity.

mplx improves upon this by adding the parameter max_jump. If the difference between two function values in the grid is larger than max_jump, a discontinuity is assumed and no line is drawn. Similarly, min_jump can be used to highlight the discontinuity.

As an example, take the function imag(log(Z)) for complex values Z. Matplotlib's contour lines along the negative real axis are wrong.

import matplotlib.pyplot as plt
import numpy as np

import mplx

x = np.linspace(-2.0, 2.0, 100)
y = np.linspace(-2.0, 2.0, 100)

X, Y = np.meshgrid(x, y)
Z = X + 1j * Y

vals = np.imag(np.log(Z))

# plt.contour(X, Y, vals, levels=[-2.0, -1.0, 0.0, 1.0, 2.0])  # draws wrong lines
mplx.contour(X, Y, vals, levels=[-2.0, -1.0, 0.0, 1.0, 2.0], max_jump=1.0)
mplx.contour(X, Y, vals, levels=[0.0], min_jump=1.0, linestyles=":")

plt.gca().set_aspect("equal")
plt.show()

Relevant discussions:

License

This software is published under the MIT license.

Comments
  • Remove some typing hint to support older numpy ?

    Remove some typing hint to support older numpy ?

    Hello, I got an error ModuleNotFoundError: No module named 'numpy.typing' due to the typing hint from numpy.typing import ArrayLike.

    Would you mind remove this hint to support older numpy version like 1.19.* ? It seems no performance issue after remove it.

    opened by ProV1denCEX 5
  • Support for horizontal barchart

    Support for horizontal barchart

    This PR solves #30 by adding an alignment argument to show_bar_values defaulting to "vertical".

    I couldn't think of a robust way of determining the alignment automatically. Checking if the width of the bar is greater or lower than its height seemed a bit dodgy in some cases... I don't know. What do you think @nschloe ?

    Usage (adapted from README demo):

    import matplotlib.pyplot as plt
    import matplotx
    
    labels = ["Australia", "Brazil", "China", "Germany", "Mexico", "United\nStates"]
    vals = [21.65, 24.5, 6.95, 8.40, 21.00, 8.55]
    ypos = range(len(vals))
    
    
    with plt.style.context(matplotx.styles.dufte_bar):
        plt.barh(ypos, vals)
        plt.yticks(ypos, labels)
        matplotx.show_bar_values("{:.2f}", alignment="horizontal")
        plt.title("average temperature [°C]")
        plt.tight_layout()
        plt.show()
    

    Produces: Figure_1

    opened by RemDelaporteMathurin 3
  • Support for horizontal barchart

    Support for horizontal barchart

    matplotx.show_bar_values works perfectly with vertical bar charts but not with horizontal bar charts.

    These are often used with long text labels.

    import matplotlib.pyplot as plt
    import matplotx
    
    labels = ["Australia", "Brazil", "China", "Germany", "Mexico", "United\nStates"]
    vals = [21.65, 24.5, 6.95, 8.40, 21.00, 8.55]
    ypos = range(len(vals))
    
    with plt.style.context(matplotx.styles.dufte_bar):
        plt.barh(ypos, vals)
        plt.yticks(ypos, labels)
        matplotx.show_bar_values("{:.2f}")
        plt.title("average temperature [°C]")
        plt.tight_layout()
        plt.show()
    
    

    Produces: image

    I can write a PR and add a show_hbar_values() function that works with horizontal bar charts and produces: image

    Or it can also be an argument of matplotx.show_bar_value defaulting to "vertical" like show_bar_value(alignement="horizontal")

    What do you think @nschloe ?

    opened by RemDelaporteMathurin 2
  • Citation

    Citation

    Great package! Thank you so much it really helps!

    I will surely use this in my next paper/talk. How can I cite this package?

    Do you plan on adding a Zenodo DOI?

    Cheers Remi

    opened by RemDelaporteMathurin 2
  • Some styles are broken

    Some styles are broken

    Using the code example in the readme:

    import matplotlib.pyplot as plt
    import matplotx
    plt.style.use(matplotx.styles.ayu)
    

    I get this error:

    File ~/.conda/envs/.../lib/python3.10/site-packages/matplotlib/style/core.py:117, in use(style)
        115 for style in styles:
        116     if not isinstance(style, (str, Path)):
    --> 117         _apply_style(style)
        118     elif style == 'default':
        119         # Deprecation warnings were already handled when creating
        120         # rcParamsDefault, no need to reemit them here.
        121         with _api.suppress_matplotlib_deprecation_warning():
    
    File ~/.conda/envs/.../lib/python3.10/site-packages/matplotlib/style/core.py:62, in _apply_style(d, warn)
         61 def _apply_style(d, warn=True):
    ---> 62     mpl.rcParams.update(_remove_blacklisted_style_params(d, warn=warn))
    
    File ~/.conda/envs/.../lib/python3.10/_collections_abc.py:994, in MutableMapping.update(self, other, **kwds)
        992 if isinstance(other, Mapping):
        993     for key in other:
    --> 994         self[key] = other[key]
        995 elif hasattr(other, "keys"):
        996     for key in other.keys():
    
    File ~/.conda/envs/.../lib/python3.10/site-packages/matplotlib/__init__.py:649, in RcParams.__setitem__(self, key, val)
        647     dict.__setitem__(self, key, cval)
        648 except KeyError as err:
    --> 649     raise KeyError(
        650         f"{key} is not a valid rc parameter (see rcParams.keys() for "
        651         f"a list of valid parameters)") from err
    
    KeyError: 'dark is not a valid rc parameter (see rcParams.keys() for a list of valid parameters)'
    

    Lib versions:

    matplotlib-base           3.5.2           py310h5701ce4_1    conda-forge
    matplotx                  0.3.7                    pypi_0    pypi
    

    This happens with aura, ayu, github, gruvbox and others.

    Some of the themes working are: challenger_deep, dracula, dufte, nord, tab10

    opened by floringogianu 1
  • Support for subplots

    Support for subplots

    Related to the issue I opened. It seems that small changes already go quite a long way towards support for subplots. This does not yet work for the style.

    For the original code, everything was correctly calculated with the axes in mind, but then it was applied to plt instead of ax, even if an ax parameter was supplied for line_labels, it was still applied to plt.

    The code changes should have no effect when there are no subplots. When there are subplots, the code now offers better support.

    import matplotlib.pyplot as plt
    import matplotx
    import numpy as np
    
    # create data
    rng = np.random.default_rng(0)
    offsets = [1.0, 1.50, 1.60]
    labels = ["no balancing", "CRV-27", "CRV-27*"]
    names = ["Plot left", "Plot right"]
    x0 = np.linspace(0.0, 3.0, 100)
    y = [offset * x0 / (x0 + 1) + 0.1 * rng.random(len(x0)) for offset in offsets]
    
    fig, axes = plt.subplots(2,1)                                           
    
    for ax, name in zip(axes, names):                                                         
        with plt.style.context(matplotx.styles.dufte):
            for yy, label in zip(y, labels):
                ax.plot(x0, yy, label=label)                                
            ax.set_xlabel("distance [m]")                                   
        matplotx.ylabel_top(name)    
        matplotx.line_labels(ax=ax)
    

    Original code

    image

    New code

    image

    opened by mitchellvanzuijlen 1
  • dufte.legend allow plt.text kwargs

    dufte.legend allow plt.text kwargs

    To draw the legend dufte uses plt.text() https://github.com/nschloe/dufte/blob/main/src/dufte/main.py#L196

    plt.text() allows for additional kwargs to customize the text https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.text.html

    If possible, could you loop through the additional text kwargs to allow for a higher customizable legend?

    opened by exc4l 0
  • Improper ylabel_top placement

    Improper ylabel_top placement

    I've been using matplotx.ylabel_top and just noticed an issue with the label placement after setting the y tick labels explicitly. A working example is below.

    import numpy as np
    from seaborn import scatterplot
    import matplotx
    
    rng = np.random.default_rng(42)
    x = rng.random(100)
    y = -2*x + rng.normal(0, 0.5, 100)
    ax = scatterplot(
        x=x,
        y=y
    )
    ax.set_yticks([0, -1, -2])
    matplotx.ylabel_top('Example\nLabel')
    

    example

    i'm using

    numpy==1.23.4
    seaborn==0.12.1
    matplotx==0.3.10
    
    opened by markmbaum 0
  • First example images not properly clickable in readme

    First example images not properly clickable in readme

    I just came across this project, looks really neat. Especially the smooth contourf got me curious.

    I've noticed in the readme that (at least on firefox) if I click any of the three images, the link that opens (even with the "open image in new tab" context menu option) is https://github.com/nschloe/matplotx/blob/main/tests/dufte_comparison.py. In contrast, the contourf images open just fine, for instance.

    I assume the reason for this is the enclosing a tag for the first example: https://github.com/nschloe/matplotx/blob/c767b08ea91492b1db9626b8b2c8786b4bc99458/README.md?plain=1#L39

    In case this is not just a firefox thing, I would recommend trying to make the first three images clickable on their own right.

    opened by adeak 0
  • Adapt `line_labels` for `PolyCollections`

    Adapt `line_labels` for `PolyCollections`

    I'm keen on making a PR to adapt line_labels to make it work with fill_between objects (PolyCollection)

    This would be the usage and output:

    import matplotlib.pyplot as plt
    import matplotx
    import numpy as np
    
    x = np.linspace(0, 1)
    y1 = np.linspace(1, 2)
    y2 = np.linspace(2, 4)
    
    plt.fill_between(x, y1, label="label1")
    plt.fill_between(x, y1, y2, label="label1")
    
    matplotx.label_fillbetween()
    plt.show()
    

    image

    @nschloe would you be interested in this feature?

    opened by RemDelaporteMathurin 0
  • Support for subplots

    Support for subplots

    Perhaps this is already implemented and I'm just unable to find it. I think this package in general is great; very easy to use and very beautiful. Thank you for your time making it.

    I'm unable to get matplotx working properly when using subplots. Adapting the Clean line plots (dufte) example to include two subplots (side-by-side, or one-below-the-other) appears not to work.

    import matplotlib.pyplot as plt
    import matplotx
    import numpy as np
    
    # create data
    rng = np.random.default_rng(0)
    offsets = [1.0, 1.50, 1.60]
    labels = ["no balancing", "CRV-27", "CRV-27*"]
    x0 = np.linspace(0.0, 3.0, 100)
    y = [offset * x0 / (x0 + 1) + 0.1 * rng.random(len(x0)) for offset in offsets]
    
    fig, axes = plt.subplots(2,1)                                           # add subplots
    
    for ax in axes:                                                         # Let's make two identical subplots
        with plt.style.context(matplotx.styles.dufte):
            for yy, label in zip(y, labels):
                ax.plot(x0, yy, label=label)                                # changed plt. to ax.
            ax.set_xlabel("distance [m]")                                   # changed plt. to ax.
            matplotx.ylabel_top("voltage [V]")                              # move ylabel to the top, rotate
            matplotx.line_labels()                                          # line labels to the right
            #plt.show()                                                     # Including this adds the 'pretty axis' below the subplots.                             
    

    image

    opened by mitchellvanzuijlen 2
Releases(v0.3.10)
Owner
Nico Schlömer
Mathematics, numerical analysis, scientific computing, Python. Always interested in new problems.
Nico Schlömer
Graphing communities on Twitch.tv in a visually intuitive way

VisualizingTwitchCommunities This project maps communities of streamers on Twitch.tv based on shared viewership. The data is collected from the Twitch

Kiran Gershenfeld 312 Jan 07, 2023
A curated list of awesome Dash (plotly) resources

Awesome Dash A curated list of awesome Dash (plotly) resources Dash is a productive Python framework for building web applications. Written on top of

Luke Singham 1.7k Dec 26, 2022
A python script and steps to display locations of peers connected to qbittorrent

A python script (along with instructions) to display the locations of all the peers your qBittorrent client is connected to in a Grafana worldmap dash

62 Dec 07, 2022
Friday Night Funkin - converts a chart from 4/4 time to 6/8 time, or from regular to swing tempo.

Chart to swing converter As seen in https://twitter.com/i_winxd/status/1462220493558366214 A program written in python that converts a chart from 4/4

5 Dec 23, 2022
Homework 2: Matplotlib and Data Visualization

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

Sophia Huang 12 Oct 20, 2022
Extensible, parallel implementations of t-SNE

openTSNE openTSNE is a modular Python implementation of t-Distributed Stochasitc Neighbor Embedding (t-SNE) [1], a popular dimensionality-reduction al

Pavlin Poličar 1.1k Jan 03, 2023
Simple CLI python app to show a stocks graph performance. Made with Matplotlib and Tiingo.

stock-graph-python Simple CLI python app to show a stocks graph performance. Made with Matplotlib and Tiingo. Tiingo API Key You will need to add your

Toby 3 May 14, 2022
A tool for automatically generating 3D printable STLs from freely available lidar scan data.

mini-map-maker A tool for automatically generating 3D printable STLs from freely available lidar scan data. Screenshots Tutorial To use this script, g

Mike Abbott 51 Nov 06, 2022
Matplotlib colormaps from the yt project !

cmyt Matplotlib colormaps from the yt project ! Colormaps overview The following colormaps, as well as their respective reversed (*_r) versions are av

The yt project 5 Sep 16, 2022
Visualization Website by using Dash and Heroku

Visualization Website by using Dash and Heroku You can visit the website https://payroll-expense-analysis.herokuapp.com/ In this project, I am interes

YF Liu 1 Jan 14, 2022
Practical-statistics-for-data-scientists - Code repository for O'Reilly book

Code repository Practical Statistics for Data Scientists: 50+ Essential Concepts Using R and Python by Peter Bruce, Andrew Bruce, and Peter Gedeck Pub

1.7k Jan 04, 2023
DataVisualization - The evolution of my arduino and python journey. New level of competence achieved

DataVisualization - The evolution of my arduino and python journey. New level of competence achieved

1 Jan 03, 2022
VDLdraw - Batch plot the log files exported from VisualDL using Matplotlib

VDLdraw Batch plot the log files exported from VisualDL using Matplotlib. At pre

Yizhou Chen 5 Sep 26, 2022
Interactive Data Visualization in the browser, from Python

Bokeh is an interactive visualization library for modern web browsers. It provides elegant, concise construction of versatile graphics, and affords hi

Bokeh 17.1k Dec 31, 2022
Visualise top-rated GitHub repositories in a barchart by keyword

This python script was written for simple purpose -- to visualise top-rated GitHub repositories in a barchart by keyword. Script generates html-page with barchart and information about repository own

Cur1iosity 2 Feb 07, 2022
Comparing USD and GBP Exchange Rates

Currency Data Visualization Comparing USD and GBP Exchange Rates This is a bar graph comparing GBP and USD exchange rates. I chose blue for the UK bec

5 Oct 28, 2021
A tool for creating Toontown-style nametags in Panda3D

Toontown-Nametag Toontown-Nametag is a tool for creating Toontown Online/Toontown Rewritten-style nametags in Panda3D. It contains a function, createN

BoggoTV 2 Dec 23, 2021
The Python ensemble sampling toolkit for affine-invariant MCMC

emcee The Python ensemble sampling toolkit for affine-invariant MCMC emcee is a stable, well tested Python implementation of the affine-invariant ense

Dan Foreman-Mackey 1.3k Jan 04, 2023
A Python Library for Self Organizing Map (SOM)

SOMPY A Python Library for Self Organizing Map (SOM) As much as possible, the structure of SOM is similar to somtoolbox in Matlab. It has the followin

Vahid Moosavi 497 Dec 29, 2022
Domain Connectivity Analysis Tools to analyze aggregate connectivity patterns across a set of domains during security investigations

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

DomainTools 34 Dec 09, 2022