allow windows programs to call dssp/mkdssp command from wsl; rework biopython on windows (PDB -> dssp -> fasta)

Overview

dssp-wsl

Converting PDB (Protein Data Bank) file format to DSSP file format is required for generating datasets of peptides and their secondary structures.

Such a task should be permitted when using BioPython. However, on Windows, the lack of the program dssp stucks everything.

Fortunately, linux distros provide dssp or mkdssp installation, and Windows Subsystem for Linux is an easy-to-get thing. We hereby provide this simple script to wrap calling dssp/mkdssp from wsl, and you can install it via:

pip install dssp-wsl

Other than installing dssp-wsl On Windows, you should also install WSL (see hints), and use sudo apt install dssp inside the subsystem. Then you rework BioPython.

Owner
Taine Zhao
Taine Zhao
A stack-based systems language that supports structures, functions, expressions, and user-defined operator behaviour

A stack-based systems language that supports structures, functions, expressions, and user-defined operator behaviour. Currently compiles to URCL with plans to add additional formats in the future.

Lucida Dragon 3 Nov 03, 2022
SMAM2 is a package manager built specifically for SourceMod.

SourceMod Addon Manager 2 (SMAM2) SMAM2 is a package manager built specifically for SourceMod. This was heavily inspired by Phil25's SMAM. I thought t

John Mascagni 6 Sep 16, 2022
A basic template for Creating Odoo Module

Odoo ERP Boilerplate A basic template for Creating Odoo Module. Folders inside this repository consist of snippet code and a module example. Folders w

Altela Eleviansyah Pramardhika 1 Feb 06, 2022
Thread-safe Python RabbitMQ Client & Management library

AMQPStorm Thread-safe Python RabbitMQ Client & Management library. Introduction AMQPStorm is a library designed to be consistent, stable and thread-sa

Erik Olof Gunnar Andersson 167 Nov 20, 2022
A telegram string extractor bot

Made with Python3 (C) @FayasNoushad Copyright permission under MIT License License - https://github.com/FayasNoushad/String-Extract-Bot/blob/main/LIC

Fayas Noushad 12 Jul 19, 2022
Discord Unverified Token Gen

Discord-Unverified-Token-Gen This is a token gen that was made in an hour and just generates unverified tokens, most will be locked. Usage: in cmd jus

Aran 2 Oct 23, 2022
Reddit cli to slack at work

Reddit CLI (v1.0) Introduction Why Reddit CLI? Coworker who sees me looking at something in a browser: "Glad you're not busy; I need you to do this, t

3 Jun 22, 2021
A multipurpose Telegram Bot writen in Python for mirroring files

Deepak Clouds Mirror Deepak Clouds Torrent is a multipurpose Telegram Bot writen in Python for mirroring files on the Internet to our beloved Google D

MR.SHAGGY 0 Dec 19, 2021
💻 Discord-Auto-Translate-Bot - If you type in the chat room, it automatically translates.

💻 Discord-Auto-Translate-Bot - If you type in the chat room, it automatically translates.

LeeSooHyung 2 Jan 20, 2022
domhttpx is a google search engine dorker with HTTP toolkit built with python, can make it easier for you to find many URLs/IPs at once with fast time.

domhttpx is a google search engine dorker with HTTP toolkit built with python, can make it easier for you to find many URLs/IPs at once with fast time

Naufal Ardhani 59 Dec 04, 2022
Python wrapper for the Intercom API.

python-intercom Not officially supported Please note that this is NOT an official Intercom SDK. The third party that maintained it reached out to us t

Intercom 215 Dec 22, 2022
MCNameBot is a fast discord bot that is used to check the availability of a Minecraft name with a simple command.

MCNameBot MCNameBot is a fast discord bot that is used to check the availability of a Minecraft name with a simple command. If you would like to just

Killin 2 Oct 11, 2022
A simple script that will watch a stream for you and earn the channel points.

Credits Main idea: https://github.com/gottagofaster236/Twitch-Channel-Points-Miner Bet system (Selenium): https://github.com/ClementRoyer/TwitchAutoCo

Alessandro Maggio 1.1k Jan 08, 2023
AWS SQS event redrive Lambda

This repository contains the Lambda function to redrive sqs events from source to destination queue while controlling maxRetry per event.

1 Oct 19, 2021
This is a unofficial library for making bots in rubika.

rubika this is a unofficial library for making bots in rubika using this library you can make your own0 rubika bot and control that those bots that ma

Bahman 50 Jan 02, 2023
Discord Token Nuker With Python

Discord token nuker a.k.a A$$Fvcker Setup For installing the requirements do this: pip install -r requirements.txt To start the Token nuker run this

PR3C14D0 8 Sep 22, 2022
A free, minimal, lightweight, cross-platform, easily expandable Twitch IRC/API bot.

parky's twitch bot A free, minimal, lightweight, cross-platform, easily expandable Twitch IRC/API bot. Features 🔌 Connect to Twitch IRC chat! 🔌 Conn

Andreas Schneider 10 Dec 30, 2022
A small package to markdownify Notion blocks.

markdownify-notion A small package to markdownify notion blocks. Installation Install this library using pip: $ pip install markdownify-notion Usage

Sergio Sánchez Zavala 2 Oct 29, 2022
A site devoted to celebrating to matching books with readers and readers with books. Inspired by the Readers' Advisory process in library science, Literati, and Stitch Fix.

Welcome to Readers' Advisory Greetings, fellow book enthusiasts! Visit Readers' Advisory! Menu Technologies Key Features Database Schema Front End Rou

jane martin 6 Dec 12, 2021
A course on getting started with the Twitter API v2 for academic research

Getting started with the Twitter API v2 for academic research Welcome to this '101 course' on getting started with academic research using the Twitter

@TwitterDev 426 Jan 04, 2023