Pytorch implementation of PTNet for high-resolution and longitudinal infant MRI synthesis

Related tags

Deep LearningPTNet
Overview

Pyramid Transformer Net (PTNet)

Project | Paper

Pytorch implementation of PTNet for high-resolution and longitudinal infant MRI synthesis.

PTNet: A High-Resolution Infant MRI Synthesizer Based on Transformer
Xuzhe Zhang1, Xinzi He1, Jia Guo2, Nabil Ettehadi1, Natalie Aw2, David Semanek2, Jonathan Posner2, Andrew Laine1, Yun Wang2
1Columbia University Department of Biomedical Engineering, 2CUMC Department of Psychiatry

Usage and Demo

Coming Soon

Prerequisites

  • Linux
  • Python3.6
  • NVIDIA GPU (11G memory or larger) + CUDA cuDNN

Getting Started

Installation

coming soon

Testing

coming soon

Dataset

coming soon

Training

coming soon

More Training/Test Details

coming soon

Citation

If you find this useful for your research, please use the following.

@article{zhang2021ptnet,
  title={PTNet: A High-Resolution Infant MRI Synthesizer Based on Transformer},
  author={Zhang, Xuzhe and He, Xinzi and Guo, Jia and Ettehadi, Nabil and Aw, Natalie and Semanek, David and Posner, Jonathan and Laine, Andrew and Wang, Yun},
  journal={arXiv preprint arXiv:2105.13993},
  year={2021}
}

Acknowledgments

This code borrows heavily from: Tokens-to-Token ViT: Training Vision Transformers from Scratch on ImageNet, pix2pixHD, pytorch-CycleGAN-and-pix2pix.

Owner
Xuzhe Johnny Zhang
image processing; CV; deep learning; computer-assisted medical image diagnosis/interpretation
Xuzhe Johnny Zhang
TRACER: Extreme Attention Guided Salient Object Tracing Network implementation in PyTorch

TRACER: Extreme Attention Guided Salient Object Tracing Network This paper was accepted at AAAI 2022 SA poster session. Datasets All datasets are avai

Karel 118 Dec 29, 2022
AOT (Associating Objects with Transformers) in PyTorch

An efficient modular implementation of Associating Objects with Transformers for Video Object Segmentation in PyTorch

162 Dec 14, 2022
(ICONIP 2020) MobileHand: Real-time 3D Hand Shape and Pose Estimation from Color Image

MobileHand: Real-time 3D Hand Shape and Pose Estimation from Color Image This repo contains the source code for MobileHand, real-time estimation of 3D

90 Dec 12, 2022
Official PyTorch Implementation of "AgentFormer: Agent-Aware Transformers for Socio-Temporal Multi-Agent Forecasting".

AgentFormer This repo contains the official implementation of our paper: AgentFormer: Agent-Aware Transformers for Socio-Temporal Multi-Agent Forecast

Ye Yuan 161 Dec 23, 2022
Pytorch implementation of "Forward Thinking: Building and Training Neural Networks One Layer at a Time"

forward-thinking-pytorch Pytorch implementation of Forward Thinking: Building and Training Neural Networks One Layer at a Time Requirements Python 2.7

Kim Heecheol 65 Oct 06, 2022
ISBI 2022: Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image.

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image Introduction This repository contains the PyTorch implem

25 Nov 09, 2022
Real-Time and Accurate Full-Body Multi-Person Pose Estimation&Tracking System

News! Aug 2020: v0.4.0 version of AlphaPose is released! Stronger tracking! Include whole body(face,hand,foot) keypoints! Colab now available. Dec 201

Machine Vision and Intelligence Group @ SJTU 6.7k Dec 28, 2022
A Japanese Medical Information Extraction Toolkit

JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ

7 Dec 12, 2022
Sentinel-1 vessel detection model used in the xView3 challenge

sar_vessel_detect Code for the AI2 Skylight team's submission in the xView3 competition (https://iuu.xview.us) for vessel detection in Sentinel-1 SAR

AI2 6 Sep 10, 2022
Code To Tune or Not To Tune? Zero-shot Models for Legal Case Entailment.

COLIEE 2021 - task 2: Legal Case Entailment This repository contains the code to reproduce NeuralMind's submissions to COLIEE 2021 presented in the pa

NeuralMind 13 Dec 16, 2022
A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

Denoising Diffusion Probabilistic Model for Proteins Implementation of Denoising Diffusion Probabilistic Model in Pytorch. It is a new approach to gen

Phil Wang 108 Nov 23, 2022
Official Repository for Machine Learning class - Physics Without Frontiers 2021

PWF 2021 Física Sin Fronteras es un proyecto del Centro Internacional de Física Teórica (ICTP) en Trieste Italia. El ICTP es un centro dedicado a fome

36 Aug 06, 2022
Code and data form the paper BERT Got a Date: Introducing Transformers to Temporal Tagging

BERT Got a Date: Introducing Transformers to Temporal Tagging Satya Almasian*, Dennis Aumiller*, and Michael Gertz Heidelberg University Contact us vi

54 Dec 04, 2022
Compact Bidirectional Transformer for Image Captioning

Compact Bidirectional Transformer for Image Captioning Requirements Python 3.8 Pytorch 1.6 lmdb h5py tensorboardX Prepare Data Please use git clone --

YE Zhou 19 Dec 12, 2022
Generative Autoregressive, Normalized Flows, VAEs, Score-based models (GANVAS)

GANVAS-models This is an implementation of various generative models. It contains implementations of the following: Autoregressive Models: PixelCNN, G

MRSAIL (Mini Robotics, Software & AI Lab) 6 Nov 26, 2022
An AI made using artificial intelligence (AI) and machine learning algorithms (ML) .

DTech.AIML An AI made using artificial intelligence (AI) and machine learning algorithms (ML) . This is created by help of some members in my team and

1 Jan 06, 2022
Active learning for Mask R-CNN in Detectron2

MaskAL - Active learning for Mask R-CNN in Detectron2 Summary MaskAL is an active learning framework that automatically selects the most-informative i

49 Dec 20, 2022
The Generic Manipulation Driver Package - Implements a ROS Interface over the robotics toolbox for Python

Armer Driver Armer aims to provide an interface layer between the hardware drivers of a robotic arm giving the user control in several ways: Joint vel

QUT Centre for Robotics (QCR) 13 Nov 26, 2022
Fast and robust certifiable relative pose estimation

Fast and Robust Relative Pose Estimation for Calibrated Cameras This repository contains the code for the relative pose estimation between two central

42 Dec 06, 2022
LEAP: Learning Articulated Occupancy of People

LEAP: Learning Articulated Occupancy of People Paper | Video | Project Page This is the official implementation of the CVPR 2021 submission LEAP: Lear

Neural Bodies 60 Nov 18, 2022