Implementation of a protein autoregressive language model, but with autoregressive infilling objective (editing subsequences capability)

Overview

Protein GLM (wip)

Implementation of a protein autoregressive language model, but with autoregressive infilling objective (editing subsequences capability). It will also make use of a super-conditioning technique as outlined here.

The Transformers model will employ every state of the art improvement currently known.

Citations

@inproceedings{Du2021GLMGL,
  title   = {GLM: General Language Model Pretraining with Autoregressive Blank Infilling},
  author  = {Zhengxiao Du and Yujie Qian and Xiao Liu and Ming Ding and Jiezhong Qiu and Zhilin Yang and Jie Tang},
  year    = {2021}
}
You might also like...
Pytorch implementation of "MOSNet: Deep Learning based Objective Assessment for Voice Conversion"

MOSNet pytorch implementation of "MOSNet: Deep Learning based Objective Assessment for Voice Conversion" https://arxiv.org/abs/1904.08352 Dependency L

Pytorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling
Pytorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling

Parallel Tacotron2 Pytorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling

The official implementation of VAENAR-TTS, a VAE based non-autoregressive TTS model.

VAENAR-TTS This repo contains code accompanying the paper "VAENAR-TTS: Variational Auto-Encoder based Non-AutoRegressive Text-to-Speech Synthesis". Sa

MEND: Model Editing Networks using Gradient Decomposition

MEND: Model Editing Networks using Gradient Decomposition Setup Environment This codebase uses Python 3.7.9. Other versions may work as well. Create a

Core ML tools contain supporting tools for Core ML model conversion, editing, and validation.

Core ML Tools Use coremltools to convert machine learning models from third-party libraries to the Core ML format. The Python package contains the sup

Official codebase for running the small, filtered-data GLIDE model from GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models.

GLIDE This is the official codebase for running the small, filtered-data GLIDE model from GLIDE: Towards Photorealistic Image Generation and Editing w

 Generative Models for Graph-Based Protein Design
Generative Models for Graph-Based Protein Design

Graph-Based Protein Design This repo contains code for Generative Models for Graph-Based Protein Design by John Ingraham, Vikas Garg, Regina Barzilay

7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle

kaggle-hpa-2021-7th-place-solution Code for 7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle. A description of the met

Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Releases(0.0.2a)
Owner
Phil Wang
Working with Attention. It's all we need
Phil Wang
Deep Image Matting implementation in PyTorch

Deep Image Matting Deep Image Matting paper implementation in PyTorch. Differences "fc6" is dropped. Indices pooling. "fc6" is clumpy, over 100 millio

Yang Liu 724 Dec 27, 2022
GluonMM is a library of transformer models for computer vision and multi-modality research

GluonMM is a library of transformer models for computer vision and multi-modality research. It contains reference implementations of widely adopted baseline models and also research work from Amazon

42 Dec 02, 2022
a morph transfer UGATIT for image translation.

Morph-UGATIT a morph transfer UGATIT for image translation. Introduction 中文技术文档 This is Pytorch implementation of UGATIT, paper "U-GAT-IT: Unsupervise

55 Nov 14, 2022
Repository for code and dataset for our EMNLP 2021 paper - “So You Think You’re Funny?”: Rating the Humour Quotient in Standup Comedy.

AI-OpenMic Dataset The dataset is available for download via the follwing link. Repository for code and dataset for our EMNLP 2021 paper - “So You Thi

6 Oct 26, 2022
Seeing Dynamic Scene in the Dark: High-Quality Video Dataset with Mechatronic Alignment (ICCV2021)

Seeing Dynamic Scene in the Dark: High-Quality Video Dataset with Mechatronic Alignment This is a pytorch project for the paper Seeing Dynamic Scene i

DV Lab 21 Nov 28, 2022
PyTorch implementation of SQN based on CloserLook3D's encoder

SQN_pytorch This repo is an implementation of Semantic Query Network (SQN) using CloserLook3D's encoder in Pytorch. For TensorFlow implementation, che

PointCloudYC 1 Oct 21, 2021
Indices Matter: Learning to Index for Deep Image Matting

IndexNet Matting This repository includes the official implementation of IndexNet Matting for deep image matting, presented in our paper: Indices Matt

Hao Lu 357 Nov 26, 2022
This example implements the end-to-end MLOps process using Vertex AI platform and Smart Analytics technology capabilities

MLOps with Vertex AI This example implements the end-to-end MLOps process using Vertex AI platform and Smart Analytics technology capabilities. The ex

Google Cloud Platform 238 Dec 21, 2022
This repository lets you interact with Lean through a REPL.

lean-gym This repository lets you interact with Lean through a REPL. See Formal Mathematics Statement Curriculum Learning for a presentation of lean-g

OpenAI 87 Dec 28, 2022
BoxInst: High-Performance Instance Segmentation with Box Annotations

Introduction This repository is the code that needs to be submitted for OpenMMLab Algorithm Ecological Challenge, the paper is BoxInst: High-Performan

88 Dec 21, 2022
Privacy as Code for DSAR Orchestration: Privacy Request automation to fulfill GDPR, CCPA, and LGPD data subject requests.

Meet Fidesops: Privacy as Code for DSAR Orchestration A part of the greater Fides ecosystem. ⚡ Overview Fidesops (fee-dez-äps, combination of the Lati

Ethyca 44 Dec 06, 2022
RP-GAN: Stable GAN Training with Random Projections

RP-GAN: Stable GAN Training with Random Projections This repository contains a reference implementation of the algorithm described in the paper: Behna

Ayan Chakrabarti 20 Sep 18, 2021
PRTR: Pose Recognition with Cascade Transformers

PRTR: Pose Recognition with Cascade Transformers Introduction This repository is the official implementation for Pose Recognition with Cascade Transfo

mlpc-ucsd 133 Dec 30, 2022
Repo for the ACMMM20 submission: "Personalized breath based biometric authentication with wearable multimodality".

personalized-breath Repo for the ACMMM20 submission: "Personalized breath based biometric authentication with wearable multimodality". Guideline To ex

Manh-Ha Bui 2 Nov 15, 2021
Official code repository for the EMNLP 2021 paper

Integrating Visuospatial, Linguistic and Commonsense Structure into Story Visualization PyTorch code for the EMNLP 2021 paper "Integrating Visuospatia

Adyasha Maharana 23 Dec 19, 2022
ICCV2021 Oral SA-ConvONet: Sign-Agnostic Optimization of Convolutional Occupancy Networks

Sign-Agnostic Convolutional Occupancy Networks Paper | Supplementary | Video | Teaser Video | Project Page This repository contains the implementation

63 Nov 18, 2022
PyTorch common framework to accelerate network implementation, training and validation

pytorch-framework PyTorch common framework to accelerate network implementation, training and validation. This framework is inspired by works from MML

Dongliang Cao 3 Dec 19, 2022
Implementation of algorithms for continuous control (DDPG and NAF).

DEPRECATION This repository is deprecated and is no longer maintaned. Please see a more recent implementation of RL for continuous control at jax-sac.

Ilya Kostrikov 288 Dec 31, 2022
python library for invisible image watermark (blind image watermark)

invisible-watermark invisible-watermark is a python library and command line tool for creating invisible watermark over image.(aka. blink image waterm

Shield Mountain 572 Jan 07, 2023
code for the ICLR'22 paper: On Robust Prefix-Tuning for Text Classification

On Robust Prefix-Tuning for Text Classification Prefix-tuning has drawed much attention as it is a parameter-efficient and modular alternative to adap

Zonghan Yang 12 Nov 30, 2022