Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Last update: Jan 05, 2023

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction.

If you find the survey or this repository useful in your research, please consider citing our paper:

@inproceedings{poliddicombisurvey,
       title = {{A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction}},
       author = {Benedek Rozemberczki and Stephen Bonner and Andriy Nikolov and Michaël Ughetto and Sebastian Nilsson and Eliseo Papa},
       year = {2021}
}

License

Apache 2.0

Comments

✨ Add "Relational Gaifman Models" + dataset
Add "Efficient Learning of Relational Gaifman Models using Probabilistic Logic" and dataset links

It might make sense to refer to one of the papers with respect to "high-level" or "low-level" models (see related publications here: https://srlearn.github.io/relational-datasets/dataset_descriptions/drug_interactions/). For now, this pull request adds links to the 2019 PLP paper under "Datasets."
opened by hayesall 0

Releases(v_00002)

v_00002(Jan 3, 2022)
What's Changed

✨ Add "Relational Gaifman Models" + dataset by @hayesall in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

New Contributors

@hayesall made their first contribution in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

Full Changelog: https://github.com/AstraZeneca/awesome-drug-pair-scoring/compare/v_00001...v_00002
Source code(tar.gz)
Source code(zip)
v_00001(Nov 29, 2021)
The repository covers deep learning papers that solve these tasks:

Drug - Drug Interaction Prediction

Polypharmacy Side Effect Prediction

Drug Combination Synergy Scoring

Source code(tar.gz)
Source code(zip)

Owner

AstraZeneca

Data and AI: Unlocking new science insights

GitHub Repository

Simple Tensorflow implementation of "Adaptive Convolutions for Structure-Aware Style Transfer" (CVPR 2021)

AdaConv — Simple TensorFlow Implementation [Paper] : Adaptive Convolutions for Structure-Aware Style Transfer (CVPR 2021) Note This repository does no

26 Nov 18, 2022

This is the official pytorch implementation of AutoDebias, an automatic debiasing method for recommendation.

AutoDebias This is the official pytorch implementation of AutoDebias, a debiasing method for recommendation system. AutoDebias is proposed in the pape

77 Nov 25, 2022

Art Project "Schrödinger's Game of Life"

Repo of the project "Team Creative Quantum AI: Schrödinger's Game of Life" Installation new conda env: conda create --name qcml python=3.8 conda activ

2 Sep 15, 2022

This repository contains code released by Google Research.

26.6k Dec 31, 2022

Drone Task1 - Drone Task1 With Python

Drone_Task1 Matching Results 3.mp4 1.mp4

11 Nov 14, 2022

Code for AutoNL on ImageNet (CVPR2020)

Neural Architecture Search for Lightweight Non-Local Networks This repository contains the code for CVPR 2020 paper Neural Architecture Search for Lig

104 Aug 31, 2022

Two-stage CenterNet

Probabilistic two-stage detection Two-stage object detectors that use class-agnostic one-stage detectors as the proposal network. Probabilistic two-st

1.1k Jan 03, 2023

HyperPose is a library for building high-performance custom pose estimation applications.

1.2k Jan 04, 2023

GBIM(Gesture-Based Interaction map)

手势交互地图 GBIM(Gesture-Based Interaction map)，基于视觉深度神经网络的交互地图，通过电脑摄像头观察使用者的手势变化，进而控制地图进行简单的交互。网络使用PaddleX提供的轻量级模型PPYOLO Tiny以及MobileNet V3 small，使得整个模型大小约10MB左右，即使在CPU下也能快速定位和识别手势。

8 Feb 10, 2022

TrTr: Visual Tracking with Transformer

TrTr: Visual Tracking with Transformer We propose a novel tracker network based on a powerful attention mechanism called Transformer encoder-decoder a

66 Dec 27, 2022

Official Code for "Non-deep Networks"

Non-deep Networks arXiv:2110.07641 Ankit Goyal, Alexey Bochkovskiy, Jia Deng, Vladlen Koltun Overview: Depth is the hallmark of DNNs. But more depth m

567 Dec 12, 2022

This repo is customed for VisDrone.

Object Detection for VisDrone(无人机航拍图像目标检测) My environment 1、Windows10 (Linux available) 2、tensorflow = 1.12.0 3、python3.6 (anaconda) 4、cv2 5、ensemble

53 Jul 17, 2022

Using VapourSynth with super resolution models and speeding them up with TensorRT.

VSGAN-tensorrt-docker Using image super resolution models with vapoursynth and speeding them up with TensorRT. Using NVIDIA/Torch-TensorRT combined wi

111 Jan 05, 2023

unet-family: Ultimate version

unet-family: Ultimate version 基于之前my-unet代码，我整理出来了这一份终极版本unet-family，方便其他人阅读。相比于之前的my-unet代码，代码分类更加规范，有条理对于clone下来的代码不需要修改各种复杂繁琐的路径问题，直接就可以运行。并且代码有

2 Sep 19, 2022

Semi-Supervised Semantic Segmentation with Cross-Consistency Training (CCT)

Semi-Supervised Semantic Segmentation with Cross-Consistency Training (CCT) Paper, Project Page This repo contains the official implementation of CVPR

344 Dec 29, 2022

Code for KDD'20 "Generative Pre-Training of Graph Neural Networks"

GPT-GNN: Generative Pre-Training of Graph Neural Networks GPT-GNN is a pre-training framework to initialize GNNs by generative pre-training. It can be

346 Dec 19, 2022

Custom studies about block sparse attention.

Block Sparse Attention 研究总结本人近半年来对Block Sparse Attention（块稀疏注意力）的研究总结（持续更新中）。按时间顺序，主要分为如下三部分： PyTorch 自定义 CUDA 算子——以矩阵乘法为例基于 Triton 的 Block Sparse A

2 Jan 09, 2022

Discord bot for notifying on github events

Git-Observer Discord bot for notifying on github events ⚠️ This bot is meant to write messages to only one channel (implementing this for multiple pro

0 Apr 19, 2022

A PyTorch Implementation of the paper - Choi, Woosung, et al. "Investigating u-nets with various intermediate blocks for spectrogram-based singing voice separation." 21th International Society for Music Information Retrieval Conference, ISMIR. 2020.

Investigating U-NETS With Various Intermediate Blocks For Spectrogram-based Singing Voice Separation A Pytorch Implementation of the paper "Investigat

63 Nov 14, 2022

YOLOX-CondInst - Implement CondInst which is a instances segmentation method on YOLOX

YOLOX CondInst -- YOLOX 实例分割前言本项目是自己学习实例分割时，复现的代码. 通过自己编程，让自己对实例分割有更进一步的了解。若想

16 Nov 18, 2022