Generate knowledge graphs with interesting geometries, like lattices

Overview

Geometric Graphs

Tests Cookiecutter template from @cthoyt PyPI PyPI - Python Version PyPI - License Documentation Status Code style: black

Generate knowledge graphs with interesting geometries, like lattices. Works on Python 3.9+ because it uses cool new features. Get out of that 2020 funk and install the most recent version of Python.

💪 Getting Started

See https://github.com/cthoyt/translational-toys for example usage to generate charts like

.

🚀 Installation

The most recent release can be installed from PyPI with:

$ pip install geometric_graphs

The most recent code and data can be installed directly from GitHub with:

$ pip install git+https://github.com/cthoyt/geometric-graphs.git

To install in development mode, use the following:

$ git clone git+https://github.com/cthoyt/geometric-graphs.git
$ cd geometric-graphs
$ pip install -e .

👐 Contributing

Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See CONTRIBUTING.rst for more information on getting involved.

👋 Attribution

⚖️ License

The code in this package is licensed under the MIT License.

🍪 Cookiecutter

This package was created with @audreyfeldroy's cookiecutter package using @cthoyt's cookiecutter-snekpack template.

🛠️ For Developers

See developer instrutions

The final section of the README is for if you want to get involved by making a code contribution.

Testing

After cloning the repository and installing tox with pip install tox, the unit tests in the tests/ folder can be run reproducibly with:

$ tox

Additionally, these tests are automatically re-run with each commit in a GitHub Action.

📦 Making a Release

After installing the package in development mode and installing tox with pip install tox, the commands for making a new release are contained within the finish environment in tox.ini. Run the following from the shell:

$ tox -e finish

This script does the following:

  1. Uses BumpVersion to switch the version number in the setup.cfg and src/geometric_graphs/version.py to not have the -dev suffix
  2. Packages the code in both a tar archive and a wheel
  3. Uploads to PyPI using twine. Be sure to have a .pypirc file configured to avoid the need for manual input at this step
  4. Push to GitHub. You'll need to make a release going with the commit where the version was bumped.
  5. Bump the version to the next patch. If you made big changes and want to bump the version by minor, you can use tox -e bumpversion minor after.
Owner
Charles Tapley Hoyt
Bio/cheminformatician, open scientist, maintainer of @pybel and @pykeen, part of @indralab (he/him)
Charles Tapley Hoyt
GitHub English Top Charts

Help you discover excellent English projects and get rid of the interference of other spoken language.

kon9chunkit 529 Jan 02, 2023
Bioinformatics tool for exploring RNA-Protein interactions

Explore RNA-Protein interactions. RNPFind is a bioinformatics tool. It takes an RNA transcript as input and gives a list of RNA binding protein (RBP)

Nahin Khan 3 Jan 27, 2022
A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.

Visdom A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Python. Overview Concepts Setup Usage API To

FOSSASIA 9.4k Jan 07, 2023
erdantic is a simple tool for drawing entity relationship diagrams (ERDs) for Python data model classes

erdantic is a simple tool for drawing entity relationship diagrams (ERDs) for Python data model classes. Diagrams are rendered using the venerable Graphviz library.

DrivenData 129 Jan 04, 2023
termplotlib is a Python library for all your terminal plotting needs.

termplotlib termplotlib is a Python library for all your terminal plotting needs. It aims to work like matplotlib. Line plots For line plots, termplot

Nico Schlömer 553 Dec 30, 2022
Data Visualizations for the #30DayChartChallenge

The #30DayChartChallenge This repository contains all the charts made for the #30DayChartChallenge during the month of April. This project aims to exp

Isaac Arroyo 7 Sep 20, 2022
BGraph is a tool designed to generate dependencies graphs from Android.bp soong files.

BGraph BGraph is a tool designed to generate dependencies graphs from Android.bp soong files. Overview BGraph (for Build-Graphs) is a project aimed at

Quarkslab 10 Dec 19, 2022
:small_red_triangle: Ternary plotting library for python with matplotlib

python-ternary This is a plotting library for use with matplotlib to make ternary plots plots in the two dimensional simplex projected onto a two dime

Marc 611 Dec 29, 2022
A Python library for plotting hockey rinks with Matplotlib.

Hockey Rink A Python library for plotting hockey rinks with Matplotlib. Installation pip install hockey_rink Current Rinks The following shows the cus

24 Jan 02, 2023
nptsne is a numpy compatible python binary package that offers a number of APIs for fast tSNE calculation.

nptsne nptsne is a numpy compatible python binary package that offers a number of APIs for fast tSNE calculation and HSNE modelling. For more detail s

Biomedical Visual Analytics Unit LUMC - TU Delft 29 Jul 05, 2022
Farhad Davaripour, Ph.D. 1 Jan 05, 2022
JupyterHub extension for ContainDS Dashboards

ContainDS Dashboards for JupyterHub A Dashboard publishing solution for Data Science teams to share results with decision makers. Run a private on-pre

Ideonate 179 Nov 29, 2022
An(other) implementation of JSON Schema for Python

jsonschema jsonschema is an implementation of JSON Schema for Python. from jsonschema import validate # A sample schema, like what we'd get f

Julian Berman 4k Jan 04, 2023
script to generate HeN ipfs app exports of GLSL shaders

HeNerator A simple script to generate HeN ipfs app exports from any frag shader created with: GlslViewer GlslEditor The Book of Shaders glslCanvas VS

Patricio Gonzalez Vivo 22 Dec 21, 2022
This is a Cross-Platform Plot Manager for Chia Plotting that is simple, easy-to-use, and reliable.

Swar's Chia Plot Manager A plot manager for Chia plotting: https://www.chia.net/ Development Version: v0.0.1 This is a cross-platform Chia Plot Manage

Swar Patel 1.3k Dec 13, 2022
A research of IT labor market based especially on hh.ru. Salaries, rate of technologies and etc.

hh_ru_research Проект реализован в учебных целях анализа рынка труда, в особенности по hh.ru Input data В качестве входных данных используются сериали

3 Sep 07, 2022
Matplotlib JOTA style for making figures

Matplotlib JOTA style for making figures This repo has Matplotlib JOTA style to format plots and figures for publications and presentation.

JOTA JORNALISMO 2 May 05, 2022
These data visualizations were created as homework for my CS40 class. I hope you enjoy!

Data Visualizations These data visualizations were created as homework for my CS40 class. I hope you enjoy! Nobel Laureates by their Country of Birth

9 Sep 02, 2022
This is a learning tool and exploration app made using the Dash interactive Python framework developed by Plotly

Support Vector Machine (SVM) Explorer This app has been moved here. This repo is likely outdated and will not be updated. This is a learning tool and

Plotly 150 Nov 03, 2022
Generate the report for OCULTest.

Sample report generated in this function Usage example from utils.gen_report import generate_report if __name__ == '__main__': # def generate_rep

Philip Guo 1 Mar 10, 2022