Scripts and outputs related to the paper Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings.

Last update: Nov 01, 2021

Overview

Knowledge Graph Embeddings and Chemical Effect Prediction, 2020.

Scripts and outputs related to the paper Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings.

A snapshot of TERA (the Toxicological Effect and Risk Assessment Knowledge Graph) is avalible as a Zenodo dataset:

To run the codes you must install KGE-Keras.

To reproduce results from paper run:

bash run.sh

This will take several days, depending on hardware avalible. 3-5 days on Nvidia GTX 1070ti. Set --MAX_TRIALS 0 to use default parameters.

Alternativly, unzip results.zip and run

python3 analyse_results.py

Related publications

Erik B. Myklebust, Ernesto Jimenez Ruiz, Jiaoyan Chen, Raoul Wolf, Knut Erik Tollefsen. Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings. Accepted for publication in the Semantic Web Journal, 2021. Paper REPOSITORY

Owner

Knowledge Graphs at the Norwegian Institute for Water Research

GitHub Repository

Eth brownie struct encoding example

eth-brownie struct encoding example Overview This repository contains an example of encoding a struct, so that it can be used in a function call, usin

2 Mar 04, 2022

Deep Learning Emotion decoding using EEG data from Autism individuals

Deep Learning Emotion decoding using EEG data from Autism individuals This repository includes the python and matlab codes using for processing EEG 2D

12 Dec 08, 2022

PyTorch implementation of: Michieli U. and Zanuttigh P., "Continual Semantic Segmentation via Repulsion-Attraction of Sparse and Disentangled Latent Representations", CVPR 2021.

Continual Semantic Segmentation via Repulsion-Attraction of Sparse and Disentangled Latent Representations This is the official PyTorch implementation

42 Nov 09, 2022

On the Complementarity between Pre-Training and Back-Translation for Neural Machine Translation (Findings of EMNLP 2021))

PTvsBT On the Complementarity between Pre-Training and Back-Translation for Neural Machine Translation (Findings of EMNLP 2021) Citation Please cite a

10 Nov 25, 2022

A simple program for training and testing vit

Vit This is a simple program for training and testing vit. Key requirements: torch, torchvision and timm. Dataset I put 5 categories of the cub classi

2 Oct 11, 2022

Code for EMNLP'21 paper "Types of Out-of-Distribution Texts and How to Detect Them"

ood-text-emnlp Code for EMNLP'21 paper "Types of Out-of-Distribution Texts and How to Detect Them" Files fine_tune.py is used to finetune the GPT-2 mo

19 Oct 28, 2022

This is the implementation of GGHL (A General Gaussian Heatmap Labeling for Arbitrary-Oriented Object Detection)

GGHL: A General Gaussian Heatmap Labeling for Arbitrary-Oriented Object Detection This is the implementation of GGHL 👋 👋 👋 [Arxiv] [Google Drive][B

551 Dec 31, 2022

NeuralWOZ: Learning to Collect Task-Oriented Dialogue via Model-based Simulation (ACL-IJCNLP 2021)

NeuralWOZ This code is official implementation of "NeuralWOZ: Learning to Collect Task-Oriented Dialogue via Model-based Simulation". Sungdong Kim, Mi

31 Oct 25, 2022

Segmentation in Style: Unsupervised Semantic Image Segmentation with Stylegan and CLIP

Segmentation in Style: Unsupervised Semantic Image Segmentation with Stylegan and CLIP Abstract: We introduce a method that allows to automatically se

134 Dec 19, 2022

TiP-Adapter: Training-free CLIP-Adapter for Better Vision-Language Modeling

TiP-Adapter: Training-free CLIP-Adapter for Better Vision-Language Modeling This is the official code release for the paper 'TiP-Adapter: Training-fre

189 Jan 04, 2023

Machine learning for NeuroImaging in Python

nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc

919 Dec 25, 2022

Solver for Large-Scale Rank-One Semidefinite Relaxations

STRIDE: spectrahedral proximal gradient descent along vertices A Solver for Large-Scale Rank-One Semidefinite Relaxations About STRIDE is designed for

48 Dec 20, 2022

[ICCV 2021] A Simple Baseline for Semi-supervised Semantic Segmentation with Strong Data Augmentation

45 Dec 12, 2022

Create images and texts with the First Order Generative Adversarial Networks

First Order Divergence for training GANs This repository contains code accompanying the paper First Order Generative Advesarial Netoworks The majority

35 Dec 11, 2021

UAV-Networks-Routing is a Python simulator for experimenting routing algorithms and mac protocols on unmanned aerial vehicle networks.

UAV-Networks Simulator - Autonomous Networking - A.A. 20/21 UAV-Networks-Routing is a Python simulator for experimenting routing algorithms and mac pr

0 Nov 13, 2021