Pytorch Geometric Tutorials

Overview

PytorchGeometricTutorial

Hi! We are Antonio Longa and Giovanni Pellegrini, PhD students, and PhD Gabriele Santin, researcher, working between Fondazione Bruno Kessler and the University of Trento, Italy.

This project aims to present through a series of tutorials various techniques in the field of Geometric Deep Learning, focusing on how they work and how to implement them using the Pytorch geometric library, an extension to Pytorch to deal with graphs and structured data, developed by @rusty1s.

You can find our video tutorials on Youtube and at our official website here.

Feel free to join our weekly online tutorial! For more details, have a look at the official website.

Tutorials:

Installation of PyG:

In order to have running notebooks in Colab, we use the following installation commands:

!pip install torch-scatter -f https://data.pyg.org/whl/torch-1.9.0+cu111.html
!pip install torch-sparse -f https://data.pyg.org/whl/torch-1.9.0+cu111.html
!pip install torch-geometric

These version are tested and running in Colab. If instead you run the notebooks on your machine, have a look at the PyG's installation instructions to find suitable versions.

Comments
  • DiffPool tutorial does not work

    DiffPool tutorial does not work

    Thank you for making the videos and notebooks available! They are very nice and helpful. I saw that the DiffPool model still does not work for the version that is uploaded here. I was wondering if you already have the working model available?

    Thank you in advance!

    opened by lisiq 4
  • Some tutorials no longer work with Google Colab

    Some tutorials no longer work with Google Colab

    Tutorial 14 and 15 both no longer work with colab and give this error after the second cell


    OSError Traceback (most recent call last) in () 2 import os 3 import pandas as pd ----> 4 from torch_geometric.data import InMemoryDataset, Data, download_url, extract_zip 5 from torch_geometric.utils.convert import to_networkx 6 import networkx as nx

    6 frames /usr/lib/python3.7/ctypes/init.py in init(self, name, mode, handle, use_errno, use_last_error) 362 363 if handle is None: --> 364 self._handle = _dlopen(self._name, mode) 365 else: 366 self._handle = handle

    OSError: /usr/local/lib/python3.7/dist-packages/torch_sparse/_convert_cpu.so: undefined symbol: _ZNK2at6Tensor5zero_Ev

    opened by itamblyn 2
  • Modify the example1

    Modify the example1

    https://github.com/AntonioLonga/PytorchGeometricTutorial/blob/main/Tutorial1/Tutorial1.ipynb

    I think this example could be modified for the better. In fact, the nums_layer = 1 parameter should be defined in Net, and a layer of GNNStack should be defined according to this parameter in the forward method. This would solve the problem raised by YouTube video 43:29.

    opened by abcdabcd989 2
  • Tutorial 3 code

    Tutorial 3 code

    Hi,

    Thanks for this great tutorials and videos. Really nice work.

    I was wondering about the GATLayer class in the code of tutorial 3. Once the class is made, it is no longer used after the 'Use it' heading in the notebook. Instead, the GATConv from torch geometric is used directly. Then why was the GATLayer class made?

    Thanks, VR

    opened by vandana-rajan 1
  • Error for running

    Error for running "from torch_geometric.nn import Node2Vec"

    while running from torch_geometric.nn import Node2Vec in google colab an error occur OSError: /usr/local/lib/python3.7/dist-packages/torch_sparse/_convert_cpu.so: undefined symbol: _ZNK2at6Tensor5zero_Ev

    what should I do?

    opened by ayreen2 1
  • Adding Colab support for the tutorials

    Adding Colab support for the tutorials

    Thanks for your effort and great work!

    I think, In order to make the tutorials more convenient for a wide audience it would be helpful to add a colab version of the notebooks with the special button, that redirects to the http://colab.research.google.com/.

    All tutorials can be run in colab via adding the notebook from GitHub and adding the cell with the installation of the pytorch-geometric and all dependencies. But the version with native support would make it more convenient.

    opened by Godofnothing 1
  • Question about Tutorial16.ipynb

    Question about Tutorial16.ipynb

    Hello, Thank you for the nice tutorial, it helps a lot to get started! I have a few questions concerning Tutorial16.ipynb: 1/ what is the effect of the parameter lin=True? 2/ what's the effect of changing the number of hidden and output channels? 3/ what is the purpose of l1, e1, l2, e2? Best, Claire

    opened by claireguepin 0
  • Some questions I found in this tutorial

    Some questions I found in this tutorial

    Hi, this is a nice tutorial. However, I find that there are some minor problems with the materials.

    1. I fond that they are same links so I think you can delete one. image
    2. In the node2vec practice colab notebook, the current installation requirement will lead the colab environment to break down. I tried this combination and it works: image Could you please figure out why? Thanks a lot!
    opened by HelloWorldLTY 0
Releases(v1.0.0)
Owner
Antonio Longa
Antonio Longa
A python module for scientific analysis of 3D objects based on VTK and Numpy

A lightweight and powerful python module for scientific analysis and visualization of 3d objects.

Marco Musy 1.5k Jan 06, 2023
The Dual Memory is build from a simple CNN for the deep memory and Linear Regression fro the fast Memory

Simple-DMA a simple Dual Memory Architecture for classifications. based on the paper Dual-Memory Deep Learning Architectures for Lifelong Learning of

1 Jan 27, 2022
Naszilla is a Python library for neural architecture search (NAS)

A repository to compare many popular NAS algorithms seamlessly across three popular benchmarks (NASBench 101, 201, and 301). You can implement your ow

270 Jan 03, 2023
PyTorch implementation of MSBG hearing loss model and MBSTOI intelligibility metric

PyTorch implementation of MSBG hearing loss model and MBSTOI intelligibility metric This repository contains the implementation of MSBG hearing loss m

BUT <a href=[email protected]"> 9 Nov 08, 2022
Export CenterPoint PonintPillars ONNX Model For TensorRT

CenterPoint-PonintPillars Pytroch model convert to ONNX and TensorRT Welcome to CenterPoint! This project is fork from tianweiy/CenterPoint. I impleme

CarkusL 149 Dec 13, 2022
Source code and data in paper "MDFEND: Multi-domain Fake News Detection (CIKM'21)"

MDFEND: Multi-domain Fake News Detection This is an official implementation for MDFEND: Multi-domain Fake News Detection which has been accepted by CI

Rich 40 Dec 18, 2022
Equivariant CNNs for the sphere and SO(3) implemented in PyTorch

Equivariant CNNs for the sphere and SO(3) implemented in PyTorch

Jonas Köhler 893 Dec 28, 2022
DeepDiffusion: Unsupervised Learning of Retrieval-adapted Representations via Diffusion-based Ranking on Latent Feature Manifold

DeepDiffusion Introduction This repository provides the code of the DeepDiffusion algorithm for unsupervised learning of retrieval-adapted representat

4 Nov 15, 2022
This package implements the algorithms introduced in Smucler, Sapienza, and Rotnitzky (2020) to compute optimal adjustment sets in causal graphical models.

optimaladj: A library for computing optimal adjustment sets in causal graphical models This package implements the algorithms introduced in Smucler, S

Facundo Sapienza 6 Aug 04, 2022
This project hosts the code for implementing the ISAL algorithm for object detection and image classification

Influence Selection for Active Learning (ISAL) This project hosts the code for implementing the ISAL algorithm for object detection and image classifi

25 Sep 11, 2022
An unofficial implementation of "Unpaired Image Super-Resolution using Pseudo-Supervision." CVPR2020

UnpairedSR An unofficial implementation of "Unpaired Image Super-Resolution using Pseudo-Supervision." CVPR2020 turn RCAN(modified) -- xmodel(xilinx

JiaKui Hu 10 Oct 28, 2022
library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization

NLopt is a library for nonlinear local and global optimization, for functions with and without gradient information. It is designed as a simple, unifi

Steven G. Johnson 1.4k Dec 25, 2022
Official implementation of TMANet.

Temporal Memory Attention for Video Semantic Segmentation, arxiv Introduction We propose a Temporal Memory Attention Network (TMANet) to adaptively in

wanghao 94 Dec 02, 2022
Quantify the difference between two arbitrary curves in space

similaritymeasures Quantify the difference between two arbitrary curves Curves in this case are: discretized by inidviudal data points ordered from a

Charles Jekel 175 Jan 08, 2023
(ICCV 2021) ProHMR - Probabilistic Modeling for Human Mesh Recovery

ProHMR - Probabilistic Modeling for Human Mesh Recovery Code repository for the paper: Probabilistic Modeling for Human Mesh Recovery Nikos Kolotouros

Nikos Kolotouros 209 Dec 13, 2022
GLANet - The code for Global and Local Alignment Networks for Unpaired Image-to-Image Translation arxiv

GLANet The code for Global and Local Alignment Networks for Unpaired Image-to-Image Translation arxiv Framework: visualization results: Getting Starte

stanley 29 Dec 14, 2022
buildseg is a building extraction plugin of QGIS based on PaddlePaddle.

buildseg buildseg is a building extraction plugin of QGIS based on PaddlePaddle. TODO Extract building on 512x512 remote sensing images. Extract build

Yizhou Chen 11 Sep 26, 2022
Surrogate- and Invariance-Boosted Contrastive Learning (SIB-CL)

Surrogate- and Invariance-Boosted Contrastive Learning (SIB-CL) This repository contains all source code used to generate the results in the article "

Charlotte Loh 3 Jul 23, 2022
Dynamic hair modeling from monocular videos using deep neural networks

Dynamic Hair Modeling The source code of the networks for our paper "Dynamic hair modeling from monocular videos using deep neural networks" (SIGGRAPH

53 Oct 18, 2022
Official pytorch implementation of paper Dual-Level Collaborative Transformer for Image Captioning (AAAI 2021).

Dual-Level Collaborative Transformer for Image Captioning This repository contains the reference code for the paper Dual-Level Collaborative Transform

lyricpoem 160 Dec 11, 2022