Uses MIT/MEDSL, New York Times, and US Census datasources to analyze per-county COVID-19 deaths.

Overview

Covid County

Executive summary

Deaths per-100k

Total deaths

Setup

Install miniconda, then in the command line, run

conda create -n covid-county
conda activate covid-county
conda install pandas ipython matplotlib tabulate

(Let me know if you want pure-Python no-Conda instructions via venv.)

2020 US presidential election

I've already downloaded countypres_2000-2020.csv from https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/VOQCHQ but you can download it again to ensure I haven't committed bad data.

2020 data is missing counts for District of Columbia (FIPS 11001)? Party split taken from 2016 election.

Census

From https://www.census.gov/programs-surveys/popest/technical-documentation/research/evaluation-estimates/2020-evaluation-estimates/2010s-counties-total.html I downloaded co-est2020.csv from the "Annual Resident Population Estimates for States and Counties: April 1, 2010 to July 1, 2019; April 1, 2020; and July 1, 2020 (CO-EST2020)" link. It's committed in this repo but you can download it yourself too.

Covid

Install Git and run this in this directory: git clone --depth 1 https://github.com/nytimes/covid-19-data.git (it might take a while)

Note five boroughs of NYC are combined into a single "county". This is taken into account by merging the 2020 Presidential votes from all five boroughs into a single county (since we can't split the Covid deaths into individual boroughs, this is the best we can do). Fix follows the recommendation per upstream issue 105.

Run

python main.py

(Takes ~45 seconds on my 2015-vintage laptop.)

More results

party bin total Covid-19 deaths
Rep 80+% 38284
Rep 60–79% 211416
Rep 50–59% 123587
Dem 50–59% 196084
Dem 60–79% 210070
Dem 80+% 18331
unknown 5243

Simply by party:

  • Dem: 424485
  • Rep: 373287
Owner
Ahmed Fasih
Full-stack & quantitative dev—not a banker 👟. He/him || they/them.
Ahmed Fasih
Open source platform for Data Science Management automation

Hydrosphere examples This repo contains demo scenarios and pre-trained models to show Hydrosphere capabilities. Data and artifacts management Some mod

hydrosphere.io 6 Aug 10, 2021
Pypeln is a simple yet powerful Python library for creating concurrent data pipelines.

Pypeln Pypeln (pronounced as "pypeline") is a simple yet powerful Python library for creating concurrent data pipelines. Main Features Simple: Pypeln

Cristian Garcia 1.4k Dec 31, 2022
Data pipelines built with polars

valves Warning: the project is very much work in progress. Valves is a collection of functions for your data .pipe()-lines. This project aimes to host

14 Jan 03, 2023
A probabilistic programming library for Bayesian deep learning, generative models, based on Tensorflow

ZhuSuan is a Python probabilistic programming library for Bayesian deep learning, which conjoins the complimentary advantages of Bayesian methods and

Tsinghua Machine Learning Group 2.2k Dec 28, 2022
Using Python to derive insights on particular Pokemon, Types, Generations, and Stats

Pokémon Analysis Andreas Nikolaidis February 2022 Introduction Exploratory Analysis Correlations & Descriptive Statistics Principal Component Analysis

Andreas 1 Feb 18, 2022
This is a repo documenting the best practices in PySpark.

Spark-Syntax This is a public repo documenting all of the "best practices" of writing PySpark code from what I have learnt from working with PySpark f

Eric Xiao 447 Dec 25, 2022
A pipeline that creates consensus sequences from a Nanopore reads. I

A pipeline that creates consensus sequences from a Nanopore reads. It clusters reads that are similar to each other and creates a consensus that is then identified using BLAST.

Ada Madejska 2 May 15, 2022
Repository created with LinkedIn profile analysis project done

EN/en Repository created with LinkedIn profile analysis project done. The datase

Mayara Canaver 4 Aug 06, 2022
Toolchest provides APIs for scientific and bioinformatic data analysis.

Toolchest Python Client Toolchest provides APIs for scientific and bioinformatic data analysis. It allows you to abstract away the costliness of runni

Toolchest 11 Jun 30, 2022
Pandas and Dask test helper methods with beautiful error messages.

beavis Pandas and Dask test helper methods with beautiful error messages. test helpers These test helper methods are meant to be used in test suites.

Matthew Powers 18 Nov 28, 2022
Py-price-monitoring - A Python price monitor

A Python price monitor This project was focused on Brazil, so the monitoring is

Samuel 1 Jan 04, 2022
Fitting thermodynamic models with pycalphad

ESPEI ESPEI, or Extensible Self-optimizing Phase Equilibria Infrastructure, is a tool for thermodynamic database development within the CALPHAD method

Phases Research Lab 42 Sep 12, 2022
OpenARB is an open source program aiming to emulate a free market while encouraging players to participate in arbitrage in order to increase working capital.

Overview OpenARB is an open source program aiming to emulate a free market while encouraging players to participate in arbitrage in order to increase

Tom 3 Feb 12, 2022
Python reader for Linked Data in HDF5 files

Linked Data are becoming more popular for user-created metadata in HDF5 files.

The HDF Group 8 May 17, 2022
Pizza Orders Data Pipeline Usecase Solved by SQL, Sqoop, HDFS, Hive, Airflow.

PizzaOrders_DataPipeline There is a Tony who is owning a New Pizza shop. He knew that pizza alone was not going to help him get seed funding to expand

Melwin Varghese P 4 Jun 05, 2022
Pandas on AWS - Easy integration with Athena, Glue, Redshift, Timestream, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (Parquet, CSV, JSON and EXCEL).

AWS Data Wrangler Pandas on AWS Easy integration with Athena, Glue, Redshift, Timestream, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretMana

Amazon Web Services - Labs 3.3k Jan 04, 2023
Analyze the Gravitational wave data stored at LIGO/VIRGO observatories

Gravitational-Wave-Analysis This project showcases how to analyze the Gravitational wave data stored at LIGO/VIRGO observatories, using Python program

1 Jan 23, 2022
Python package for analyzing sensor-collected human motion data

Python package for analyzing sensor-collected human motion data

Simon Ho 71 Nov 05, 2022
Common bioinformatics database construction

biodb Common bioinformatics database construction 1.taxonomy (Substance classification database) Download the database wget -c https://ftp.ncbi.nlm.ni

sy520 2 Jan 04, 2022
Elasticsearch tool for easily collecting and batch inserting Python data and pandas DataFrames

ElasticBatch Elasticsearch buffer for collecting and batch inserting Python data and pandas DataFrames Overview ElasticBatch makes it easy to efficien

Dan Kaslovsky 21 Mar 16, 2022