An interactive GUI for WhiteboxTools in a Jupyter-based environment

Related tags

Data Visualizationpythongeospatialwhiteboxjupyter-notebookgisremote-sensinglidarhydrologygeoprocessinggeomorphologygeomorphometrywhitebox-tools
Overview

whiteboxgui

image image image image image image image

An interactive GUI for WhiteboxTools in a Jupyter-based environment

Description

The whiteboxgui Python package is a Jupyter frontend for WhiteboxTools, an advanced geospatial data analysis platform developed by Prof. John Lindsay (webpage; jblindsay) at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. WhiteboxTools can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. WhiteboxTools also contains advanced tooling for spatial hydrological analysis (e.g. flow-accumulation, watershed delineation, stream network analysis, sink removal), terrain analysis (e.g. common terrain indices such as slope, curvatures, wetness index, hillshading; hypsometric analysis; multi-scale topographic position analysis), and LiDAR data processing. LiDAR point clouds can be interrogated (LidarInfo, LidarHistogram), segmented, tiled and joined, analyized for outliers, interpolated to rasters (DEMs, intensity images), and ground-points can be classified or filtered. WhiteboxTools is not a cartographic or spatial data visualization package; instead it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

The WhiteboxTools currently contains 447 tools, which are each grouped based on their main function into one of the following categories: Data Tools, GIS Analysis, Hydrological Analysis, Image Analysis, LiDAR Analysis, Mathematical and Statistical Analysis, Stream Network Analysis, and Terrain Analysis. For a listing of available tools, complete with documentation and usage details, please see the WhiteboxTools User Manual.

Installation

whiteboxgui is available on PyPI. To install whiteboxgui, run this command in your terminal:

pip install whiteboxgui

whiteboxgui is also available on conda-forge. If you have Anaconda or Miniconda installed on your computer, you can create a conda Python environment to install whiteboxgui:

conda create -n wbt python
conda activate wbt
conda install mamba -c conda-forge
mamba install whiteboxgui -c conda-forge

Usage

The whiteboxgui provides a Graphical User Interface (GUI) for WhiteboxTools in a Jupyter-based environment, which can be invoked using the following Python script. You can also try image

import whiteboxgui
whiteboxgui.show(tree=True)

Imgur

Demo

tutorial

Credits

This package was created with Cookiecutter and the giswqs/pypackage project template.

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Comments
  • Error code : 101 on Whitebox gui

    Error code : 101 on Whitebox gui

    Environment Information

    • whiteboxgui version:
    • Python version: 3.10
    • Operating System: MacOs

    Description

    Hello,

    I am currently trying to use the withebox LIDAR tools on my mac via the Gui (same error with Qgis), but i have a consistant error code, the 101 code.

    What I Did

    I am using Lidar data from the French national geographic institut, the file is under the .laz extension. I tried three different tools in withebox (lidarinfo, ClipLidarToPolygon, ClassifyBuldingLidar) and the same error code appears. The wired thing is that i downloaded a different set of lidar data from the same platform i downloaded the previous set and the error did no occur on that set even though i followed the same protocol.

    Does anyone have an idea why this might happen ?

    Error { kind: UnexpectedEof, message: "failed to fill whole buffer" }', /Users/johnlindsay/.cargo/registry/src/github.com-1ecc6299db9ec823/las-0.7.4/src/compression/mod.rs:78:18
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
Error code 101
    bug 
    opened by mathiaschabal 2
  • [feature] search tools to match searching texts also with descriptions of a tool in its documentation

    [feature] search tools to match searching texts also with descriptions of a tool in its documentation

    Hello. I notice that the search tools behavior differently between whiteboxgui and the GUI from whitebox.Runner(). It seems that search tools of whiteboxgui only match the title of the tool but not the rich description from its documentation. Is it possible to enhance the search tool of whiteboxgui like that in whitebox.Runner()?

    Pics: whitebox whiteboxgui

    Feature Request 
    opened by CWen001 2
  • CVE-2007-4559 Patch

    CVE-2007-4559 Patch

    Patching CVE-2007-4559

    Hi, we are security researchers from the Advanced Research Center at Trellix. We have began a campaign to patch a widespread bug named CVE-2007-4559. CVE-2007-4559 is a 15 year old bug in the Python tarfile package. By using extract() or extractall() on a tarfile object without sanitizing input, a maliciously crafted .tar file could perform a directory path traversal attack. We found at least one unsantized extractall() in your codebase and are providing a patch for you via pull request. The patch essentially checks to see if all tarfile members will be extracted safely and throws an exception otherwise. We encourage you to use this patch or your own solution to secure against CVE-2007-4559. Further technical information about the vulnerability can be found in this blog.

    If you have further questions you may contact us through this projects lead researcher Kasimir Schulz.

    opened by TrellixVulnTeam 0
  • Add support for selecting multiple files

    Add support for selecting multiple files

    Currently, ipyfilechooser only allows selecting a single file. Some tools requires a file list (i.e., selecting multiple files). One potential workaround I can think of is to use a SelectMultiple widget and push ipyfilechooser.selected to the widget with register_callback. Related issue: https://github.com/crahan/ipyfilechooser/issues/11

    https://ipywidgets.readthedocs.io/en/latest/examples/Widget%20List.html#SelectMultiple image

    Feature Request 
    opened by giswqs 2
Releases(v2.2.0)
Owner
Qiusheng Wu
Assistant Professor of Geography at the University of Tennessee, Knoxville
Qiusheng Wu
GitHub Repository https://whiteboxgui.gishub.org
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