FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

Overview

FusionNet_Pytorch

FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

Requirements

  • Pytorch 0.1.11
  • Python 3.5.2
  • wget

Download code

git clone https://github.com/GunhoChoi/FusionNet_Pytorch
cd FusionNet_Pytorch

Download Map data

wget https://people.eecs.berkeley.edu/~tinghuiz/projects/pix2pix/datasets/maps.tar.gz
tar -xzvf maps.tar.gz

Make model directory

mkdir model

Train Model

python3 main.py  -> medical image without augmentation
python3 main_augmented.py  -> map image with naive augmentation

Out of memory error -> change batch_size / img_size / out_dim

Result

Medical Image

Map Image

Original Image / Label Image / Generated Image

Related Works

Owner
Choi Gunho
Yonsei Univ. Computer Science and Business Major(2010~2017)
Choi Gunho
Adversarial Learning for Modeling Human Motion

Adversarial Learning for Modeling Human Motion This repository contains the open source code which reproduces the results for the paper: Adversarial l

wangqi 6 Jun 15, 2021
FedML: A Research Library and Benchmark for Federated Machine Learning

FedML: A Research Library and Benchmark for Federated Machine Learning 📄 https://arxiv.org/abs/2007.13518 News 2021-02-01 (Award): #NeurIPS 2020# Fed

FedML-AI 2.3k Jan 08, 2023
Image reconstruction done with untrained neural networks.

PyTorch Deep Image Prior An implementation of image reconstruction methods from Deep Image Prior (Ulyanov et al., 2017) in PyTorch. The point of the p

Atiyo Ghosh 192 Nov 30, 2022
Pytorch Implementation of Various Point Transformers

Pytorch Implementation of Various Point Transformers Recently, various methods applied transformers to point clouds: PCT: Point Cloud Transformer (Men

Neil You 434 Dec 30, 2022
Mip-NeRF: A Multiscale Representation for Anti-Aliasing Neural Radiance Fields.

This repository contains the code release for Mip-NeRF: A Multiscale Representation for Anti-Aliasing Neural Radiance Fields. This implementation is written in JAX, and is a fork of Google's JaxNeRF

Google 625 Dec 30, 2022
A PyTorch Lightning Callback for pushing models to the Hugging Face Hub đŸ¤—âšĄī¸

hf-hub-lightning A callback for pushing lightning models to the Hugging Face Hub. Note: I made this package for myself, mostly...if folks seem to be i

Nathan Raw 27 Dec 14, 2022
This is an official implementation for "PlaneRecNet".

PlaneRecNet This is an official implementation for PlaneRecNet: A multi-task convolutional neural network provides instance segmentation for piece-wis

yaxu 50 Nov 17, 2022
A toolset of Python programs for signal modeling and indentification via sparse semilinear autoregressors.

SPAAR Description A toolset of Python programs for signal modeling via sparse semilinear autoregressors. References Vides, F. (2021). Computing Semili

Fredy Vides 0 Oct 30, 2021
Feature extraction made simple with torchextractor

torchextractor: PyTorch Intermediate Feature Extraction Introduction Too many times some model definitions get remorselessly copy-pasted just because

Antoine Broyelle 89 Oct 31, 2022
To model the probability of a soccer coach leave his/her team during Campeonato Brasileiro for 10 chosen teams and considering years 2018, 2019 and 2020.

To model the probability of a soccer coach leave his/her team during Campeonato Brasileiro for 10 chosen teams and considering years 2018, 2019 and 2020.

Larissa Sayuri Futino Castro dos Santos 1 Jan 20, 2022
Implementation of Bottleneck Transformer in Pytorch

Bottleneck Transformer - Pytorch Implementation of Bottleneck Transformer, SotA visual recognition model with convolution + attention that outperforms

Phil Wang 621 Jan 06, 2023
Fine-grained Control of Image Caption Generation with Abstract Scene Graphs

Faster R-CNN pretrained on VisualGenome This repository modifies maskrcnn-benchmark for object detection and attribute prediction on VisualGenome data

Shizhe Chen 7 Apr 20, 2021
Implementation of "Scaled-YOLOv4: Scaling Cross Stage Partial Network" using PyTorch framwork.

YOLOv4-large This is the implementation of "Scaled-YOLOv4: Scaling Cross Stage Partial Network" using PyTorch framwork. YOLOv4-CSP YOLOv4-tiny YOLOv4-

Kin-Yiu, Wong 2k Jan 02, 2023
MADT: Offline Pre-trained Multi-Agent Decision Transformer

MADT: Offline Pre-trained Multi-Agent Decision Transformer A link to our paper can be found on Arxiv. Overview Official codebase for Offline Pre-train

Linghui Meng 51 Dec 21, 2022
Wordle-solver - Wordle answer generation program in python

🟨 Wordle Solver 🟩 Wordle answer generation program in python âœ”ī¸ Requirements U

Dahyun Kang 4 May 28, 2022
Sound and Cost-effective Fuzzing of Stripped Binaries by Incremental and Stochastic Rewriting

StochFuzz: A New Solution for Binary-only Fuzzing StochFuzz is a (probabilistically) sound and cost-effective fuzzing technique for stripped binaries.

Zhuo Zhang 164 Dec 05, 2022
Text2Art is an AI art generator powered with VQGAN + CLIP and CLIPDrawer models

Text2Art is an AI art generator powered with VQGAN + CLIP and CLIPDrawer models. You can easily generate all kind of art from drawing, painting, sketch, or even a specific artist style just using a t

Muhammad Fathy Rashad 643 Dec 30, 2022
MMRazor: a model compression toolkit for model slimming and AutoML

Documentation: https://mmrazor.readthedocs.io/ English | įŽ€äŊ“中文 Introduction MMRazor is a model compression toolkit for model slimming and AutoML, which

OpenMMLab 899 Jan 02, 2023
Convolutional Neural Networks on Graphs with Fast Localized Spectral Filtering

Graph ConvNets in PyTorch October 15, 2017 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbresson

Xavier Bresson 287 Jan 04, 2023
Pytorch implementation of AREL

Status: Archive (code is provided as-is, no updates expected) Agent-Temporal Attention for Reward Redistribution in Episodic Multi-Agent Reinforcement

8 Nov 25, 2022